|
09:00-9:30 |
Registration etc. |
|
|
09:30-9:45 |
Welcome Remarks by The
Director – ICGEB and Dinesh Gupta |
V. S. Chauhan and Dinesh
Gupta |
|
9:45-10:00 |
Introduction by
participants |
All participants |
|
10:10-11:00 |
The bioinformatics experiment |
Jessica Kissinger |
|
11:00-11:15 |
Coffee break |
|
|
11:15-12:00 |
Dinesh Gupta |
|
|
12:00-13:00 |
Linux practice |
Dinesh Gupta |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
Visit to ICGEB |
Shirshendu Mukherjee |
|
15:00-15:15 |
Coffee break |
|
|
15:15-17:00 |
Jessica Kissinger |
|
|
17:00-18:00 |
Local
BLAST and interpretation of results |
All
participants, JK, Dinesh Gupta |
|
09:00-10:00 |
Introduction to Bioinformatics
databases: Nucleic Acid Databases |
Dinesh Gupta |
|
11:00-11:15 |
Coffee Break |
|
|
11:15-12:15 |
Urmila |
|
|
12:15-13:00 |
Urmila |
|
|
13:00-14:00 |
Lunch |
|
|
14:00-1500 |
Sequence alignment: demo
and assignments |
Urmila |
|
15:00-15:15 |
Coffee Break |
|
|
15:15-17:15 |
Epitope prediction |
Urmila |
|
17:15-18:00 |
Review |
Dinesh/Urmila |
26th September 2004, Wednesday
|
09:00-10:00 |
Urmila |
|
|
10:00-11:00 |
Urmila |
|
|
11:00-11:15 |
Coffee Break |
|
|
11:15-12:15 |
Algorithms |
Alan Durham |
|
12:15-13:00 |
Jessica
Kissinger |
|
|
14:00-15:00 |
Sequence Assembly
Phred/Phrap |
Jessica Kissinger |
|
15:00-15:15 |
Sequence Assembly
Phred/Phrap Demo |
Jessica
Kissinger |
|
15:15-16:15 |
Free Computer time |
All Participants |
|
16:15-18:00 |
PERL |
Alan Durham |
|
09:00-10:00 |
Jessica Kissinger |
|
|
11:00-11:15 |
Coffee Break |
|
|
11:15-13:00 |
Phylogeny demo and
practice |
JK and all participants |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
PERL |
Alan Durham |
|
15:00– 15:15 |
Coffee break |
|
|
15:15 - 16:15 |
PERL
|
Alan Durham |
|
09:00-10:00 |
PERL I Lecture |
Alan Durham |
|
10:00-11:00 |
PERL II Practical |
Alan Durham |
|
11:00-11:15 |
Coffee Break |
|
|
11:15-13:00 |
Parasite
databases, how to find what you need |
Jessica Kissinger |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
Dinesh |
|
|
15:00-15:15 |
Coffee break |
|
|
15:15-18:00 |
EMBOSS
II practice |
Dinesh, all participants |
09:00-10:00 |
Databases |
Alan
Durham |
|
10:00-11:00 |
PERL |
Alan
Durham |
|
|
11:00-11:15 |
Coffee Break |
|
|
|
11:15 –
13:00 |
PERL |
Alan
Durham |
|
|
13:15 –
14:00 |
Lunch |
|
|
30th
October, 2005
Sunday, free time
|
Arnab Pain |
||
|
11:00-11:15 |
Coffee Break |
|
|
11:15-12:15 |
Artemis - Live Demo |
Arnab Pain |
|
12:15- 13:00 |
Practical
(Module 1: Artemis Prokaryotic) |
Arnab Pain |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
Cygwin: install linux in
your windows PC (Software) |
Dinesh |
|
15:00-15:15 |
Coffee Break |
|
|
15:15-16:15 |
PERL |
Alan Durham |
|
16:15-17:30 |
Practical
(Module 1: Artemis Prokaryotic) (continued) |
Arnab Pain |
|
17:30-18:30 |
Arnab
Pain |
|
|
|
|
|
1st
November, Tuesday (half day)
|
9:00-11:00 |
Review and practice |
Arnab
Pain, Dinesh |
|
11:00-11:15 |
Coffee break |
|
|
11:00-13:00 |
Self study |
All
participants |
2nd
November, 2005, Wednesday
|
09:00- 10:00 |
Arnab Pain |
|
|
10:00-11:00 |
Practical:
Module 2: Artemis Eukaryotic |
Arnab Pain |
|
11:00-11:15 |
Coffee Break |
|
|
11:15-13:00 |
Practical:
Module 3: Artemis Advanced |
Arnab Pain |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
Practical:
Module 4: Gene Prediction Exercises |
Arnab Pain |
|
15:00-15:15 |
Coffee break |
|
|
15:15-16:00 |
Practical:
Module 5: Small Scale Annotation |
Arnab Pain |
|
16:00-16:30 |
Arnab Pain |
|
|
16:30-18:00 |
Practical:
Module 6: Comparative Genomics |
Arnab Pain |
|
09:00- 10:00 |
Practical:
Module 6: Comparative Genomics (continued) |
Arnab Pain |
|
10:00-11:00 |
ACT: live demo |
Arnab Pain |
|
11:00-11:15 |
Coffee Break |
|
|
11:15-12:00 |
Artemis/ACT
Exercises - Catchup |
Arnab Pain |
|
12:00-13:00 |
Protein Structure Prediction: Homology Modelling and Methods for Fold Recognition |
Debasis Mohanty |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
Understanding biosynthesis of complex metabolites using computational biology |
Debasis
Mohanty |
|
15:00-15:15 |
Coffee break |
|
|
15:15-16:00 |
Amit
Sharma |
|
09:00- 10:00 |
PERL for bioinformatics – in a nutshell |
Alan Durham |
|
10:00-11:00 |
Computational analysis of DNA binding sites |
K. Chari |
|
11:00-11:15 |
Coffee Break |
|
|
11:15-12:15 |
Metabolomics and Drug target
identification from pathogenic organisms |
Andrew Lynn |
|
12:15-13:00 |
Grant writing |
Worachart Sirawaroporn |
|
13:00-14:00 |
Lunch |
|
|
14:00-15:00 |
Rational Drug Design: an
introduction |
Andrew
Lynn |
|
15:00-15:15 |
Coffee break |
|
|
15:15-16:30 |
Lecture by Sanjay Jain |
Sanjay
Jain |
|
16:30-17:30 |
Primer Designing |
Worachart |