Nuclc. Acids. Res. OUP
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16S and 23S Ribosomal RNA Mutation Database   Triman, K.L., Paull, D.S.
16S and 23S ribosomal RNA mutations
database   summary

5S Ribosomal RNA Database
5S rRNA sequences
database   summary

AAindex   Katayama, T., Kawashima, S., Kanehisa, M.
Physicochemical and biological properties of amino acids
database   summary

AARSDB   Szymanski, M., Barciszewski, J.
Aminoacyl-tRNA synthetase sequences
database   summary

ABCdb
ABC transporters
database   summary

ACeDB
C. elegans, S. pombe, and human sequences and genomic information
database   summary

ACTIVITY
Functional DNA/RNA site activity
database   summary

ALFRED   Rajeevan, H.1, Osier, M.V.1, Cheung, K.-H.2, Deng, H.1, Druskin, L.2, Heinzen, R.1, Kidd, J. R.1, Stein, S.1, Pakstis, A. J.1, Tosches, N. P.2, Yen, C. -C.1, Miller, P. L.2, Kidd, K. K.1
Allele frequencies and DNA polymorphisms
database   summary

AllGenes   Babenko, V., Brunk, B., Crabtree, J., Diskin, S., Fischer, S., Gan, Y., Li, L., Mazzarelli, J., McWeeney, S., Pinney, D., Pizarro, A., Schug, J., Stoeckert, C.
Human and mouse gene index integrating gene, transcript, and protein annotation
database   summary

AMmtDB   Lanave C.1, Licciulli F.2, Incampo L.2, Marolla A.2, Attimonelli M.2
Metazoan mitochondrial genes
database   summary

Androgen Receptor Gene Mutations Database
Mutations in the androgen receptor gene
database   summary

AraC/XylS database   Tobes, R., Martínez-Bueno, M., Ramos, J.L.
A database of the AraC/XylS protein family of positive regulators in bacteria.
database   summary

ARED   Bakheet, T.1, Williams, B2, Khabar, K.2
AU-rich element-containing mRNAs
database   summary

Ares Lab Yeast Intron Database   Telerski, A.1, Centers, R. J.2, Ares, M.2
Splicesomal introns in Saccharomyces cerevisiae
database   summary

ArkDB
Genome databases for farm and other animals
database   summary

ArrayExpress   Brazma, A., Parkinson, H., Sarkans, U., Shojatalab, M., Vilo, J., Abeygunawardena, N., Holloway, E., Kapushesky, M., Kemmeren, P., Garcia Lara, G., Oezcimen, A., Sansone, S., Rocca-Serra, P.
Public collection of microarray gene expression data
database   summary

ASC - Active Sequence Collection   Angelo Facchiano1, Antonio Facchiano2, Francesco Facchiano2
Bbiologically-active short amino acid sequences
database   summary

ASDB
Protein products and expression patterns of alternatively-spliced genes
database   summary

AsMamDB
Alternatively-spliced mammalian genes
database   summary

ASPD   Valuev, V.P., Afonnikov D.A., Ponomarenko M.P., Kolchanov N.A.
Artificial Selected Proteins/Peptides Database
database   summary

Asthma Gene Database   Wjst M
Linkage and mutation studies on the genetics of asthma and allergy
database   summary

ASTRAL   Chandonia, J. M.1, Walker, N.2, Lo Conte, L.3, Koehl, P.4, Levitt, M.4, Brenner, S. E.5
Sequences of domains of known structure, selected subsets, and sequence-structure correspondences
database   summary

Atlas of Genetics and Cytogenetics in Oncology and Haematology   Huret JL1, Dessen P2, Bernheim A2
Chromosomal abnormalities in cancer
database   summary

Axeldb
Gene expression in Xenopus
database   summary

BAliBASE
Benchmark database for comparison of multiple sequence alignments
database   summary

BioImage
Searchable database of multidimensional biological images
database   summary

BioMagResBank
NMR spectroscopic data from proteins, peptides, and nucleic acids
database   summary

Biomolecular Interaction Network Database (BIND)   Bader, G.D.2, Donaldson, I.5, Wolting, C.5, Ouellette, B.F.F.3, Pawson, T.2, Hogue, C.W.V.2
Molecular interactions, complexes, and pathways
database   summary

Blocks   Henikoff, J.G.1, Pietrokovski, S.3, Greene, E.A.1, Taylor, N.1, Ng, P.C.1, Henikoff, S.2
Multiple alignments of conserved regions of protein families
database   summary

BodyMap
Human and mouse gene expression data
database   summary

BTKbase   Väliaho, J1, Smith, C.I.E.2, Vihinen, M.3
Mutation registry for X-linked agammaglobulinemia
database   summary

CADB: Conformational Angles DataBase of Proteins   Sheik, S.S., Ananthalakshmi, P., Ramya Bhargavi, G., Sekar, K.
Conformation angles of protein structures, with associated crystallographic data
database   summary

CASRDB
CASR mutations causing FHH, NSHPT and ADH
database   summary

CATH   Pearl, F.M.1, Bennett, C.F.1, Bray, J.E.1, Harrison, A.P.1, Martin, N.2, Shepherd, A.1, Sillitoe, I.1, Thornton, J.3, Orengo, C.A.1
Protein domain structures
database   summary

CDD   Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y., Bryant, S.H.
Alignment models for conserved protein domains
database   summary

CE
CE: A Resource to Compute and Review 3-D Protein Structure Alignments
database   summary

CKAAPs DB
Structurally-similar proteins with dissimilar sequences
database   summary

Clusters of Orthologous Groups (COG)   Tatusov, R.L., Natale, D.A., Fedorova, N.D., Jackson, J., Jacobs, A., Krylov, D.M., Mekhedov, S.L., Nikolskaya, A.N., Rao, B.S., Wolf, Y.I., Aravind, L., Lanczycki, C., Masumder, R., Sreekumar, K., Vasudevan, S., Walker, D.R., Tatusova, T.A., Yao, K., Yin, J., Koonin, E.V.
Phylogenetic classification of proteins from 44 complete genomes
database   summary

CluSTr   Kriventseva, E.V., Servant, F., Fleischmann, W., Zdobnov, E.V., Apweiler, R.
Automatic classification of SWISS-PROT+TrEMBL proteins
database   summary

Comprehensive Microbial Resource
Completed microbial genomes
database   summary

CORG: A database for COmparative Regulatory Genomics   Dieterich, C., Wang, H., Rateitschak, K., Luz, H., Vingron, M.
Conserved non-coding sequence blocks
database   summary

Cre Transgenic Database
Cre transgenic mouse lines
database   summary

CropNet
Genome mapping in crop plants
database   summary

CroW 21   Peter, Y., Chalifa-Caspi, V., Olender, T., Glusman, G., Peter, I., Safran, M., Lancet, D., Groner, Y.
Human chromosome 21 database
database   summary

CSD
Crystal structure information for organic and metal organic compounds.
database   summary

CSDBase   Weber, M.H.W., Doll, N., Marahiel, M.A.
Cold shock domain-containing proteins
database   summary

CUTG
Codon usage tables
database   summary

CyanoBase
Synechocystis sp. genome
database   summary

Cytokine Gene Polymorphism Database
Cytokine gene polymorphisms, in vitro expression and disease-association studies
database   summary

Cytokine Gene Polymorphism in Human Disease   Bidwell, J.1, Keen, L.1, Haukim, N.1, Smith, A.1, Gallagher, G.2, Kimberley, R.3, Huizinga, T.4, McDermott, M.5, Oksenberg, J.6, McNicholl, J.7, Pociot, F.8, Hardt, C.9, D'Alfonso, S.10
Cytokine gene polymorphism literature database
database   summary

DAtA
Annotated coding sequences from Arabidopsis
database   summary

Database for mobile group II introns   Dai, L., Toor, N., Olson, R., Keeping, A., Zimmerly, S.
Database for mobile group II introns
database   summary

Database of Germline p53 Mutations
Mutations in human tumor and cell line p53 gene
database   summary

Database of Interacting Proteins   Xenarios, I., Salwinski, L., Xiaoqun, JD., Higney, P., Kim, SM., Eisenberg, D.
Experimentally-determined protein-protein interactions
database   summary

Database of Macromolecular Movements
Descriptions of protein and macromolecular motions, including movies
database   summary

Database of Ribosomal Crosslinks (DRC)
Ribosomal crosslinking data
database   summary

DBcat
Catalog of databases
database   summary

dbSNP
Single nucleotide polymorphisms
database   summary

DBTBS   Ishii, T.1, Yoshida, K.2, Terai, G.3, Fujita, Y.2, Nakai, K.4
B. subtilis binding factors and promoters
database   summary

Decoys 'R' Us
Computer-generated protein conformations based on sequence data
database   summary

DExH/D Family Database
DEAD-box, DEAH-box, and DExH-box proteins
database   summary

DNA Data Bank of Japan (DDBJ)   Imanishi, T.1, Miyazaki, S.2, Fukami-Kobayashi, K.2, Sugawara, H.2, Gojobori, T.2, Tateno, Y.2
All known nucleotide and protein sequences; International Nucleotide Sequence Database Collaboration
database   summary

DPInteract
Binding sites for E. coli DNA-binding proteins
database   summary

DRESH
Human cDNA clones homologous to Drosophila mutant genes
database   summary

DrugDB
Pharmacologically-active compounds; generic and trade names
database   summary

DSDBASE   Vinayagam, A., Sowdhamini, R.
Native and modeled disulfide bonds in proteins
database   summary

DSMM - a Database of Simulated Molecular Motions   Finocchiaro, G.2, Wang, T.1, Hoffmann, R.1, Gonzalez, A.1, Wade, R.C.1
Database of Simulated Molecular Motions
database   summary

EcoCyc   Karp, P.D.1, Collado-Vides, J.2, Paulsen, I.3, Riley, M.1, Saier, M.4, Paley, S.1, Bonavides, C.2, Gama-Castro, S.2
E. coli K-12 genome, metabolic pathways, transporters, and gene regulation
database   summary

EcoGene
E. coli K-12 sequences
database   summary

EID
Protein-coding, intron-containing genes
database   summary

EMBL Nucleotide Sequence Database
All known nucleotide and protein sequences; International Nucleotide Sequence Database Collaboration
database   summary

EMGlib
Completely-sequenced prokaryotic genomes
database   summary

eMOTIF
Protein sequence motif determination and searches
database   summary

Endogenous GPCR List
G protein-coupled receptors; expression in cell lines
database   summary

ENZYME
Enzyme nomenclature
database   summary

EPConDB   Pizarro, A.1, Pinney, D.1, Crabtree, J.1, Mazzarelli, J.1, Grant, G.1, Le, P.1, Manduchi, E.1, McWeeney, S.1, Scearce, M.2, Brestelli, J.2, Brownstein, B.3, Clifton, S.4, Inoue, H.5, Pape, D.4, Melton, D.6, Permutt, A.5, Kaestner, K.2, Stoeckert, C.2
Endocrine pancreas consortium database
database   summary

EPD   Cavin Périer, R.1, Praz, V.2, Bucher, P.2
Eukaryotic POL II promoters with experimentally-determined transcription start sites
database   summary

EpoDB
Genes expressed during human erythropoiesis
database   summary

ESTHER   Cousin, X.1, Hotelier, T.2, Marton, P.1, Chatonnet, A.1
Esterases and alpha/beta hydrolase enzymes and relatives
database   summary

ExInt
Exon-intron structure of eukaryotic genes
database   summary

EXProt   Ursing, B.M., van Enckevort, F.H.J., Leunissen, J.A.M., Siezen, R.J.
Proteins with experimentally-verified function
database   summary

FIMM
Functional molecular immunology data
database   summary

FLAGdb/FST   Samson, F.1, Brunaud, V.1, Balzergue, S.1, Dubreucq, B.2, Lepiniec, L.2, Pelletier, G.3, Caboche, M.1, Lecharny, A.1
Arabidopsis thaliana T-DNA transformants
database   summary

FlyBase
Drosophila sequences and genomic information
database   summary

FlyView
Drosophila development and genetics
database   summary

Full-Malaria   Watanabe, J.1, Sasaki, M.2, Suzuki, Y.2, Sugano, S.2
Full-length cDNA library from erythrocytic-stage Plasmodium falciparum
database   summary

FUNPEP
Low-complexity or compositionally-biased protein sequences
database   summary

G3-RH
Stanford G3 and TNG radiation hybrid maps
database   summary

GB4-RH
Genebridge4 (GB4) human radiation hybrid maps
database   summary

GDB
Human genes and genomic maps
database   summary

GELBANK   Babnigg, G., Giometti, C.S.
2D gel electrophoresis patterns from completed genomes
database   summary

GenAtlas
Human genes, markers, and phenotypes
database   summary

GenBank
All known nucleotide and protein sequences; International Nucleotide Sequence Database Collaboration
database   summary

Gene Expression Database (GXD)   Ringwald,M., Eppig,J.T., Begley,D.A., Hayamizu,T.F., Hill,D.P., McCright,I.J., Smith,C.M., Kadin,J.A., Richardson,J.E.
Mouse gene expression and genomics
database   summary

Gene Ontology Annotation (GOA)   Camon, E.B., Barrell, D., Binns, D., Fleischmann, W., Kersey, P., Magrane, M., Maslen, J., Mulder, N., Harte, N., Apweiler, R.
Assignment of gene products to the Gene Ontology (GO) resource
database   summary

Gene Resource Locator   Honkura, T.1, Ogasawara, J.2, Yamada, T.1, Morishita, S.1
Alignment of ESTs with finished human sequence
database   summary

GeneCards   Safran, M., Chalifa-Caspi, V., Shmueli, O., Lapidot, M., Rosen, N., Shmoish, M., Adato, A., Peter, I., Lancet, D.
Integrated database of human genes, maps, proteins, and diseases
database   summary

GeneMap '99
International Radiation Mapping Consortium human gene map
database   summary

Genetpig   Karsenty, E.1, Barillot, E.1, Tosser-Klopp, G.4, Lahbib-Mansais, Y.4, Hatey, F.4, Cirera, S.5, Sawera, M.5, Jørgensen, C.5, Chowdhary, B.5, Fredholm, M.5, Wimmers, K.7, Ponsuksili, S.7, Davoli, R.8, Fontanesi, L.8, Braglia, S.8, Zambonelli, P.8, Bigi, D.8, Neuenschwander, S.9, Gellin, J.4
Comparative mapping in pig (Sus scrofa)
database   summary

Genew: The Human Gene Nomenclature Database   Wain,H.M., Lush,M., Ducluzeau,F., Povey,S.
Approved symbols for all human genes
database   summary

GenMapDB   Morley, M1, Burdick, J1, Cheung, VG2
Mapped human BAC clones
database   summary

GénoPlante-Info   Samson, D., Legeai, F., Karsenty, E., Reboux, S., Veyrieras, J.-B., Just, J., Barillot, E.
Plant genomic data derived from the Génoplante consortium
database   summary

GenProtEC   Riley, M., Serres, M.H., Liang, P., Sun, Y.
Escherichia coli K-12 genome, gene products, and homologs
database   summary

Global Image Database
Annotated biological images
database   summary

GlycoSuiteDB   Cooper, C., Joshi, H., Harrison, M., Wilkins, M., Packer, N.
N- and O-linked glycan structures and biological source information
database   summary

GOBASE
Organelle genome database
database   summary

GOLD
Information regarding complete and ongoing genome projects
database   summary

GOLD.db (Genomics Of Lipid-associated Disorders)   Hackl, H., Trost, E., Maurer, M., Miranda-Saavedra, D., Stocker, G., Trajanoski, Z.
Genes, proteins, and pathways implicated in lipid- associated disorders
database   summary

GPCRDB
G protein-coupled receptors
database   summary

GRAP Mutant Databases
Mutants of family A G-Protein Coupled Receptors (GRAP)
database   summary

GTOP   Fukuchi, S., Homma, K., Sakamoto, S., Nishikawa, K.
Protein fold predictions from genome sequences
database   summary

Guide RNA Database
Guide RNA sequences
database   summary

Haemophila B Mutation Database
Point mutations, short additions, and deletions in the Factor IX gene
database   summary

HCForum
Human cytogenetics database
database   summary

Het-PDB Navi.   Yamaguchi, A.1, Tomoda, S.2, Yura, K.3, Go, M.1
Protein-small molecule interactions
database   summary

HGT-DB, Horizontal Gene Transfer-DataBase   Garcia-Vallve, S., Guzman, E, Montero, MA., Romeu, A.
Putative horizontally-transferred genes in prokaryotic genomes
database   summary

HGVbase   Fredman, D.1, Lehvaslaiho, H.2, Rios, D.1, Munns, G.1, Siegfried, M.1, Yuan, Y.P.3, Bork, P.3, Brookes, A.J.1
Curated human polymorphisms
database   summary

HIC-Up
Structures of small molecules (³hetero-compounds²)
database   summary

Histone Database   Sullivan, S.1, Sink, D.W.2, Trout, K.L.2, Makalowska, I.2, Taylor, P.M.1, Baxevanis, A.D.2, Landsman, D.1
Histone and histone fold sequences and structures
database   summary

HIV Molecular Immunology Database
HIV epitopes
database   summary

HIV RT and Protease Sequence Database   Rhee, S.-Y., Gonzales, M.J., Kantor, R., Betts, B.J., Ravela, J., Shafer, R.W.
HIV reverse transcriptase and protease sequences
database   summary

HIV Sequence Database
HIV RNA sequences
database   summary

HIV-RT
HIV reverse transcriptase and protease sequence variation
database   summary

Homeobox Page
Information relevant to homeobox proteins, classification, and evolution
database   summary

Homeodomain Resource
Homeodomain sequences, structures, and related genetic and genomic information
database   summary

Homophila   Gribskov, M.1, Bier, E.2, Reiter, L.T.3, Chien, S.4
Relationship of human disease genes to genes in Drosophila
database   summary

HOWDY   Koike, T., Tsurumine, M., Inoue, A., Uchida, N., Kuroda, M.
Integrated human genomic information
database   summary

HOX-PRO
Clustering of homeobox genes
database   summary

HS3D   Pollastro, P., Rampone, S.
Human exon, intron, and splice regions
database   summary

HSSP
Structural families and alignments; structurarlly-conserved regions and domain architecture
database   summary

HUGE
Large (>50 kDa) human proteins and cDNA sequences
database   summary

HuGeMap
Human genome genetic and physical map data
database   summary

Human BAC Ends Database
Non-redundant human BAC end sequences
database   summary

Human Gene Mutation Database (HGMD)
Known (published) gene lesions underlying human inherited disease
database   summary

Human Olfactory Receptor Data Exploratorium (HORDE)   Olender, T., Glusman, G., Feldmesser, E., Khen, M., Atarot, T., Safra, M., Lancet, D.
Olfactory receptor genes and proteins
database   summary

Human p53, human hprt, rodent lacI and rodent lacZ databases
Mutations at the human p53 and hprt genes; rodent transgenic lacI and lacZ mutations
database   summary

Human PAX2 Allelic Variant Database
Mutations in human PAX2 gene
database   summary

Human PAX6 Allelic Variant Database
Mutations in human PAX6 gene
database   summary

Human Type I and Type III Collagen Mutation Database   Dalgleish, R.
Human type I and type III collagen gene mutations
database   summary

HUNT   Yudate, HT.1, Suwa, M.2, Irie, R.1, Matsui, H.3, Nishikawa, T.4, Nakamura, Y.1, Yamaguchi, D.5, Zhang, Z.1, Yamamoto, T.1, Nagai, K.1, Hayashi, K.1, Otsuki, T.1, Sugiyama, T.1, Ota, T.1, Suzuki, Y.6, Sugano, S.6, Isogai, T.1, Masuho, Y.1
Annotated human full-length cDNA sequences
database   summary

HvrBase   Radtke, A., Rupp, K., Voelpel, K., von Haeseler, A., Meyer, S.
Primate mtDNA control region sequences
database   summary

HyPaLib
Structural elements characteristic for classes of RNA
database   summary

IARC TP53 Database   Olivier, M.
Human TP53 somatic and germline mutations
database   summary

ICB
Identification and classification of bacteria using protein-coding
database   summary

IDB/IEDB
Intron sequence and evolution
database   summary

IMB Jena Image Library of Biological Macromolecules   Reichert, J., Suehnel, J.
Visualization and analysis of three-dimensional biopolymer structures
database   summary

IMGT   Lefranc, M.-P.
Immunoglobulin, T cell receptor, and MHC sequences from human and other vertebrates
database   summary

IMGT/HLA   Robinson, J.1, Waller, MJ.1, Parham, P.2, Stoehr, P.3, Marsh, SGE.1
Polymorphic sequences of human MHC and related genes
database   summary

IMGT/MHC Database   Robinson, J1, Waller, MJ1, de Groot, N2, Bontrop, R2, Kennedy, L3, Marsh, SGE1
Major histocompatibility complex sequences
database   summary

Imprinted Genes and Parent-of-Origin Effects
Imprinted genes and parent-of-origin effects in animals
database   summary

InBase   Perler, F.B.
All known inteins (protein splicing elements): properties, sequences, bibliography
database   summary

INE   Sakata,K.2, Mukai,Y.1, Antonio,B.1, Namiki,N.1, Sakai,Y.2, Makino,K.2, Matsumoto,T.1, Sasaki,T.1
Integrated database for rice genome analysis and sequencing
database   summary

Interferon Stimulated Gene Database
Genes induced by treatment with interferons
database   summary

International Rice Information System   McLaren, CG, Bruskiewich, RM
Rice germplasm geneology and field data; rice structural and functional genomics and proteomics
database   summary

InterPro   Mulder, N.J.1, Apweiler, R.1, Attwood, T.K.2, Bairoch, A.3, Bateman, A.4, Binns, D.1, Biswas, M.10, Bradley, P.1, Bork, P.8, Bucher, P.5, Copley, R.R.11, Courcelle, E.6, Das, U.1, Durbin, R.4, Falquet, L.5, Fleischmann, W.1, Griffiths-Jones, S.4, Haft, D.9, Harte, N.1, Hermjakob, H.1, Hulo, N.3, Kahn, D.6, Kanapin, A.1, Krestyaninova, M.1, Lopez, R.1, Letunic, I.8, Lonsdale, D.1, Silventoinen, V.1, Orchard, S.E.1, Pagni, M.5, Peyruc, D.6, Ponting, C.P.7, Selengut, J.D.9, Servant, F.1, Sigrist, C.J.A.3, Vaughan, R.1, Zdobnov, E.M.8
Protein families and domains
database   summary

Intronerator
RNA splicing and gene structure in C. elegans; alignments of C. briggsae and C. elegans genomic sequences
database   summary

iProClass   Wu, C.H.1, Huang, H.1, Chen, Y.2, Barker, W.C.2
Annotated protein database with family, function, and structure information
database   summary

IRESdb : the Internal Ribosome Entry Site database   Bonnal, S., Boutonnet, C., Prado-Lourenco, L., Vagner, S.
The Internal Ribosome Entry Site database
database   summary

ISSD
Integrated sequence and structural information
database   summary

IXDB
Physical maps of human chromosome X
database   summary

JenPep   McSparron, H, Blythe, MJ, Zygouri, C, Doytchinova, IA, Flower, DR
Functional and quantitative thermodynamic data on peptide binding to immunological biomacromolecules
database   summary

Kabat Database
Sequences of proteins of immunological interest
database   summary

KEYnet
Hierarchical list of gene and protein names for data retrieval
database   summary

Kidney Development Database
Kidney development and gene expression
database   summary

KinMutBase
Disease-causing protein kinase mutations
database   summary

Klotho
Collection and categorization of biological compounds
database   summary

KMDB
Mutations in human eye disease genes
database   summary

Kyoto Encyclopedia of Genes and Genomes (KEGG)
Metabolic and regulatory pathways
database   summary

LGICdb
Ligand-gated ion channel subunit sequences
database   summary

LIGAND   Goto, S.1, Okuno, Y.1, Hattori, M.1, Nishioka, T.2, Kanehisa, M.1
Chemical compounds and reactions in biological pathways
database   summary

Lipase Engineering Database   Fischer, M., Pleiss, J.
Integrated information on sequence, structure, and function of lipases and esterases
database   summary

LPFC
Library of protein family core structures
database   summary

MAGEST
Ascidian (Halocynthia roretzi) gene expression patterns
database   summary

Medicago Genome Initiative (MGI)   Waugh, M.1, Anderson, W.1, Bell, C.2, Inman, J.1, Schilkey, F.1, Sullivan, J.1, May, G.3
Model legume Medicago ESTs, gene expression and proteomic data
database   summary

Mendel Database
Database of plant EST and STS sequences annotated with gene family information
database   summary

MEPD: A Medaka gene expression pattern database   Henrich, T.1, Ramialison, M.1, Quiring, R.2, Wittbrodt, B.2, Furutani-Seiki, M.1, Wittbrodt, J.2, Kondoh, H.1
Gene expression data from the small freshwater fish Medaka (Oryzias latipes)
database   summary

MEROPS   Rawlings, N.D., Tolle, D.P., Barrett, A.J.
Proteolytic enzymes (proteases/peptidases)
database   summary

MetaCyc   Karp, P. D., Riley, M.
Metabolic pathways and enzymes from various organisms
database   summary

MetaFam
Integrated protein family information
database   summary

Metalloprotein Database and Browser   Castagnetto, J.M., Hennessy, S.W., Roberts, V.A., Getzoff, E.D., Tainer, J.A., Pique, M.E.
Metal-binding sites in metalloproteins
database   summary

MethDB   Grunau, C.1, Renault, E.1, Hindermann, W.2, Roizes, G.1
DNA methylation data, patterns, and profiles
database   summary

MHC-Peptide Interaction Database   Ranganathan, S.1, Govindarajan, K.R.1, Kangueane, P.2, Tan, T.W.1
Class I and Class II MHC-peptide complexes
database   summary

MHCPEP
MHC-binding peptides
database   summary

MICdb: Database of Prokaryotic Microsatellites   Sreenu B. Vattipally1, Vishwanath Alevoor1, Nagaraju, Javaregowda2, Nagarajaram A. Hampapathalu1
Prokaryotic microsatellites
database   summary

MitBASE
Mitochondrial genomes, intra-species variants, and mutants
database   summary

MitoDat
Mitochondrial proteins (predominantly human)
database   summary

MITOMAP
Human mitochondrial genome
database   summary

MitoNuc/MitoAln   Attimonelli, M.1, Catalano, D.1, Gissi, C.2, Grillo, G.3, Licciulli, F.1, Liuni, S.3, Pesole, G.2, Saccone, C.1
Nuclear genes coding for mitochondrial proteins
database   summary

MITOP
Mitochondrial proteins, genes, and diseases
database   summary

MMDB
All experimentally-determined three-dimensional structures, linked to NCBI Entrez
database   summary

ModBase   Pieper, U., Eswar, N., Stuart, A.C., Ilyin, V.A., Sali, A.
Annotated comparative protein structure models
database   summary

Mouse Atlas and Gene Expression Database
Spatially-mapped gene expression data
database   summary

Mouse Genome Database (MGD)   Blake, J.A., Eppig, J.T., Richardson, J.E., Bult, C.J., Kadin, J.A., Mouse Genome Database Group
Mouse genetics, genomics, alleles & phenotypes
database   summary

Mouse Tumor Biology Database (MTB)   Bult, C.J., Krupke, D.M, Naf, D., Sundberg, J.P., Eppig, J.T.
Mouse tumor names, classification, incidence, pathology, genetic factors
database   summary

MPDB   Marra, D.
Information on synthetic oligonucleotides proven useful as primers or probes
database   summary

Munich Information Center for Protein Sequences (MIPS)   Mewes, H. W., Warfsmann, J., Kolesov, G., Gueldener, U., Mannhaupt, G., Frishman, D.
Protein and genomic sequences
database   summary

Mutation Spectra Database
Mutations in viral, bacterial, yeast, and mammalian genes
database   summary

NCBI Taxonomy Browser
Names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence
database   summary

NCIR   Nagaswamy, U., Larios-Sanz, M., Hury, J., Wang, J., Kalaimani, K., Zhao, Q., Fox, G. E.
Non-standard base-base interactions in known RNA structures
database   summary

NCL Mutations
Mutations and polymorphisms in neuronal ceroid lipofuscinoses (NCL) genes
database   summary

NDB
Nucleic acid-containing structures
database   summary

NESbase 1.0   la Cour, T.2, Gupta, R.1, Rapacki, K.1, Skriver, K.2, Poulsen, F. M.2, Brunak, S.1
Nuclear export signals
database   summary

NLSdb   Nair, Rajesh2, Carter, Phil1, Rost, Burkhard3
Nuclear localization signals
database   summary

Noncoding regulatory RNAs database   Szymanski, M.1, Erdmann, V.A.2, Barciszewski, J.1
Noncoding RNAs with regulatory functions
database   summary

NRSub
Bacillus subtilis genome
database   summary

NTDB   Chiu, W. L. A. K., Sze, C. N., Ma, N. T., Chiu, L. F., Leung, C. W., Au-Yeung, S. C. F.
Thermodynamic data for nucleic acids
database   summary

Nuclear Protein Database (NPD)   Dellaire, G.1, Farrall, R.2, Bickmore, W.A.2
Proteins localized in the nucleus
database   summary

Nuclear Receptor Resource   Danielsen, M., Martinez, E.
Nuclear receptor superfamily
database   summary

NUREBASE   Duarte, J.1, Ourjdal, T.1, Perriere, G.2, Laudet, V.1, Robinson-Rechavi, M.1
Nuclear hormone receptors
database   summary

O-GLYCBASE   Julenius, K., Rapacki, K., Brunak, S., Gupta, R.
O- and C-linked glycosylation sites in proteins
database   summary

Olfactory Receptor Database
Sequences for lfactory receptor-like molecules
database   summary

Online Mendelian Inheritance in Man
Catalog of human genetic and genomic disorders
database   summary

ooTFD   Ghosh, D
Transcription factors and gene expression
database   summary

Oral Cancer Gene Database
Cellular, molecular, and biological data for genes involved in oral cancer
database   summary

Oryzabase   Yamazaki, Y.1, Yoshimura, A.3, Nagato, Y.2, Yamakawa, T.1, Kurata, N.4
Rice genetics and genomics
database   summary

PAHdb
Mutations at the phenylalanine hydroxylase locus
database   summary

PALI   Gowri, V.S., Pandit, S.B., Karthik, P.S., Srinivasan, N., Balaji, S.
Phylogeny and alignment of homologous protein structures
database   summary

PASS2   Chakrabarti, Saikat1, Venkataramanan, K2, Sowdhamini, Ramanathan1
Structural motifs of protein superfamilies
database   summary

PathDB   Kuffner, R.M., Gonzales, M., Steadman, P., Wlodek, D.K., Jankowitz, R.J., Boinoff, J.R., MontoyA, L., Peterson, T.F., Bulmore, D.L., Blanchad, J.B.
Biochemical pathways, compounds, and metabolism
database   summary

PDB
Structure data determined by X-ray crystallography and NMR
database   summary

PDB-REPRDB   Noguchi, T., Akiyama, Y.
Representative protein chains, based on PDB entries
database   summary

PDBsum   Laskowski, R.A.
Summary of key information on structures in PDB
database   summary

PEDANT genome database   Frishman, D.1, Mokrejs, M.1, Kosykh, D.1, Kastenmüller, G.1, Kolesov, G.1, Zubrzycki, I.1, Gruber, C.2, Geier, B.2, Kaps, A.2, Albermann, K.2, Volz, A.2, Wagner, C.2, Fellenberg, M.2, Heumann, K.2, Mewes, H.-W.3
Automated analysis of genomic sequences
database   summary

PEDB
Sequences from prostate tissue and cell type-specific cDNA libraries
database   summary

PEP: Predictions for Entire Proteomes   Carter, P.1, Liu, J.2, Rost, B.1
Summarized analyses of protein sequences
database   summary

Peptaibol
Peptaibol (antibiotic peptide) sequences
database   summary

Pfam
Multiple sequence alignments and hidden Markov models of common protein domains
database   summary

PHEXdb   Sabbagh, Y.1, Tenenhouse, H.S.2
Mutations in PHEX gene causing X-linked hypophosphatemia
database   summary

PhosphoBase
Protein phosphorylation sites
database   summary

PIR-ALN
Protein sequence alignments
database   summary

PIR-NREF   Huang, H.1, Suzek, B.E.2, Wu, C.H.1
Non-redundant reference database with comprehensive protein sequences
database   summary

PKR
Protein kinase sequences, enzymology, genetics, and molecular and structural properties.
database   summary

PLACE   Higo, K.
Plant cis-acting regulatory elements
database   summary

PLANT-PIs   De Leo F.1, Volpicella M.1, Licciulli F.2, Liuni S.3, Gallerani R.1, Ceci L.R.3
Plant protease inhibitors
database   summary

PlantCARE   Rombauts, S.1, Bonnet, E.1, Thijs, G.3, Marchal, K.3, Moreau, Y.3, Van de Peer, Y.1, Rouze, P.2
Plant cis-acting regulatory elements
database   summary

PlantGDB   Shannon D. Schlueter, Qunfeng Dong, Volker Brendel
Actively-transcribed plant genomic sequences
database   summary

PLANTncRNAs   MacIntosh, G.C.1, Macalincag, M-C.P.1, Green, P.J.2
Plant non-protein coding RNAs with relevant gene expression information
database   summary

PlantsP/PlantsT   Tchieu, J.2, Fana, F.1, Fink, J.L.1, Harper, J.3, Nair, M.2, Niedner, R.H.1, Smith, D.W.2, Steube, K.1, Tam, T.1, Veretnik, S.1, Wang, D.1, Gribskov, M.1
Functional geomics databases focusing on protein involved in plant phosphorylation and membrane transport, respectively
database   summary

PlasmoDB   Bahl, A.1, Brunk, B.2, Coppel, R. L.3, Crabtree, J.2, Diskin, S. J.2, Fraunholz, M. J.1, Grant, G. R.2, Gupta, D.1, Huestis, R. L.3, Kissinger, J. C.1, Labo, P.1, Li, L.1, McWeeney, S. K.2, Milgram, A. J.1, Roos, D. S.1, Schug, J.2, Stoeckert, C. J. Jr.2
Plasmodium genome
database   summary

PLMItRNA   Guglielmo Rainaldi1, Mariateresa Volpicella1, Flavio Licciulli2, Sabino Liuni2, Raffaele Gallerani1, Luigi Ruggiero Ceci2
Mitochondrial tRNA genes and molecules in photosynthetic eukaryotes
database   summary

PMD
Compilation of protein mutant data
database   summary

PPMdb
Arabidopsis plasma membrane protein sequence and expression data
database   summary

PRESAGE   Smith, A.1, Barken, D.1, Levitt, M.2, Brenner, S. E.1
Protein structures with experimental and predictive annotations
database   summary

PRINTS   Attwood, T.K1, Blythe, M.J.3, Flower, D.R.3, Gaulton, A.1, Mabey, J.E.1, Maudling, N.1, McGregor, L.4, Mitchell, A.2, Moulton, G.1, Paine, K.3, Scordis, P.1
Hierarchical gene family fingerprints
database   summary

probeBase   Horn, M., Loy, A., Wagner, M.
rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts, and associated information
database   summary

ProClass
Protein families defined by PIR superfamilies and PROSITE patterns
database   summary

ProDom   Kahn D., Courcelle E., Gouzy J.
Protein domain families
database   summary

Prolysis
Proteases and natural and synthetic protease inhibitors
database   summary

PromEC
E. coli mRNA promoters with experimentally identified transcriptional start sites
database   summary

PROMISE
Prosthetic centers and metal ions in protein active sites
database   summary

PROSITE   Falquet, L.1, Pagni, M.1, Bucher, P.2, Bairoch, A.3, Hulo, N.3, Sigrist, C.J.A.3, Hofmann, K.4
Biologically-significant protein patterns and profiles
database   summary

Protein Information Resource (PIR)   Wu, C.H.1, Huang, H.1, Yeh, L.S.2, Hu, Z.Z.2, Barker, W.C.2
Comprehensive, annotated, non-redundant protein sequence databases
database   summary

Proteome Analysis Database   Apweiler, R.1, Fleischmann, W.1, Kanapin, A.1, Karavidopoulou, Y.1, Kersey, P.1, Kriventseva, E.V.1, Mittard,1, Mulder, N.1, Phan, I.2, Pruess, M.1, Servant, F.1
Online application of InterPro and cluSTr for the functional classification of proteins in whole genomes
database   summary

Proteome BioKnowledge Library   Costanzo, M.C., Arnaud, M.B., Csank, C.J., Hirschman, J.E., Kranz, J.E., Olsen, P., Robertson, L.S., Skrzypek, M.S., Kondu, P., Lengieza, C., Tillberg, M., Garrels, J.I.
Model organism, pathogen, and mammalian proteomes
database   summary

ProTherm
Thermodynamic data for wild-type and mutant proteins
database   summary

ProtoMap
Automated hierarchical classification of SWISS-PROT proteins
database   summary

PseudoBase   Batenburg,F.H.D.van1, Gultyaev,A.P.1, Pleij,C.W.A.2
Structural, functional and sequence data related to RNA pseudoknots
database   summary

PTCH1 Mutation Database
Mutations and SNPs found in PTCH1
database   summary

PubMed
MEDLINE and Pre-MEDLINE citations
database   summary

Rat Genome Database   Twigger, S.N.1, Shimoyama, M.1, Lu, J.1, Pasko, D.1, Bromberg, S.1, Chen, C.F.1, Chen, J.1, Gopinathrao, G.1, Nigam, R.1, Ramachandran, H.1, Mathis, J.1, Nie, J.1, Maltais, L.2, Eppig, J.T.2, Maglott, D.3, Schuler, G.3, Jacob, H.J4, Tonellato, P.J.1
Rat genetic and genomic data
database   summary

RB1 Gene Mutation Database
Mutations in the human retinoblastoma (RB1) gene
database   summary

REBASE
Restriction enzymes and associated methylases
database   summary

RECODE
Genes using programmed translational recoding in their expression
database   summary

RefSeq   Pruitt, K.D, Maglott, D.R.
Reference sequence standards for genomes, genes, transcripts, and proteins
database   summary

RegulonDB
E. coli transcriptional regulation and operon organization
database   summary

RESID
Protein structure modifications
database   summary

Rfam   Griffiths-Jones, S.1, Bateman, A.1, Marshall, M.1, Khanna, A.2, Eddy, S.R.2
Non-coding RNA families
database   summary

RHdb
Radiation hybrid map data
database   summary

Ribonuclease P Database
RNase P sequences, alignments, and structures
database   summary

Ribosomal Database Project (RDP-II)   Cole, J.R.1, Chai, B.1, Wang, Q.1, Chandra, S.1, Farris, R.J.1, Kulam, S.A.1, McGarrel, D.M.1, Schmidt, T.M.2, Garrity, G.M.2, Tiedje, J.M.2
rRNA sequence data, analysis tools, alignments, and phylogenies
database   summary

Ribosomal Differentiation of Medical Microorganisms (RIDOM)   Harmsen, D.1, Rothgänger, J.2, Sammeth, M.2, Albert, J.2
rRNA (16S and ITS) sequence-based identification of medical microorganisms
database   summary

RiceGAAS   Sakata, K.1, Numa, H.1, Nagamura, Y.1, Antonio, B.A.2, Idonuma, A.2, Shimizu, Y.3, Horiuchi, I.3, Matsumoto, T.1, Sasaki, T.1, Higo, K.1
Rice genome sequence
database   summary

RISCC
Ribosomal 16S-23S RNA gene spacer regions
database   summary

RNA Modification Database
Naturally modified nucleosides in RNA
database   summary

RNABase   Murthy, V.L., Rose, G.D.
RNA-containing structures from PDB and NDB
database   summary

RRNDB
Variation in prokaryotic ribosomal RNA operons
database   summary

RsGDB
Rhodobacter sphaeroides genome
database   summary

rSNP Guide
Single nucleotide polymorphisms in regulatory gene regions
database   summary

RTPrimerDB   Pattyn, F., Speleman, F., De Paepe, A., Vandesompele, J.
Real-time PCR primer and probe sequences
database   summary

S/MARt DB   Liebich, I.1, Christensen, M.1, Wingender, E.2
Nuclear scaffold/matrix attached regions
database   summary

Saccharomyces Genome Database   Dolinski, K., Balakrishnan, R., Christie, K., Costanzo, M., Dwight, S., Engel, S., Fisk, D., Hong, E., Issel-Tarver, L., Sethuraman, A., Theesfeld, C., Binkely, G., Lane, C., Schroeder, M., Dong, S., Kaloper, M., Weng, S., Andrada, R., Botstein, D., Cherry, J.M.
Saccharomyces cerevisiae genome
database   summary

SBASE   Vlahovicek, K1, Kajan, L1, Murvai, J2, Pongor, S1
Protein domain sequences and tools
database   summary

SCOP   Lo Conte, L.1, Brenner, S.E.2, Hubbard, T.J.P.3, Chothia, C.1, Murzin, A.G.4
Familial and structural protein relationships
database   summary

SCOR   Klosterman, P. S.1, Holbrook, S. R.2, Brenner, S. E.1
RNA structural relationships
database   summary

SDAP   Ivanciuc, O., Schein, C.H., Braun, W.
Sequences, structures, and IgE epitopes of allergenic proteins
database   summary

SELEXdb
Selected DNA/RNA functional site sequences
database   summary

SENTRA
Sensory signal transduction proteins
database   summary

SEVENS   Suwa, M.1, Sato, T.2, Okouchi, I..2, Arita, M.1, Matsumoto, S.3, Tsutsumi, S.3, Aburatani, H.3, Asai, K.1, Akiya, Y.1
7-transmembrane helix receptors
database   summary

SLoop
Classification of protein loops
database   summary

Small RNA Database
Direct sequencing of small RNA sequences from prokaryotes and eukaryotes
database   summary

SMART   Letunic, I.1, Goodstadt, L.2, Dickens, NJ.2, Doerks, T.1, Schultz, J.3, Ciccarelli, F.1, Copley, RR.1, Ponting, CP.2, Bork, P.1
Simple Modular Architecture Research Tool
database   summary

SOURCE   Diehn, M.1, Sherlock, G.2, Binkley, G.2, Jin, H.2, Matese, J.C.2, Hernandez-Boussard, T.2, Rees, C.A.2, Cherry, J.M.2, Botstein, D.2, Brown, P.O.3, Alizadeh, A.A.1
Functional genomic resource for annotations, ontologies, and expression data
database   summary

SpliceDB
Canonical and non-canonical mammalian splice sites
database   summary

SRPDB   Alm Rosenblad, M.1, Gorodkin, J.2, Knudsen, B.3, Zwieb, C.4, Samuelsson, T.1
Signal recognition particle RNA, SRP protein, and SRP receptor sequences and alignments
database   summary

STACK
Non-redundant, gene-oriented clusters
database   summary

Stanford Microarray Database   Gollub, G.1, Ball, C.A.1, Binkley, G.2, Demeter, J.1, Finkelstein, D.B.3, Hebert, J.M.4, Hernandez-Boussard, T.1, Jin, H.1, Kaloper, M.2, Matese, J.C.1, Schroeder, M.2, Brown, P.O.5, Botstein, D.2, Sherlock, G.1
Raw and normalized data from microarray experiments
database   summary

STRBase
Short tandem DNA repeats
database   summary

SubtiList   Moszer, I.1, Jones, L.M.2, Moreira, S.1, Fabry, C.1, Danchin, A.3
Bacillus subtilis 168 genome
database   summary

Subviral RNA Database
Database of viroids and viroid-like RNAs
database   summary

SUPERFAMILY   Gough, J., Chothia, C.
Assignments of proteins to structural superfamilies
database   summary

SUPFAM   Pandit, S.B.1, Balaji, S.1, Gowri, V.S.1, Abhinandan, K.R.1, Vaishnavi, R.2, Srinivasan, N.1
Grouping of sequence families into superfamilies
database   summary

SV40 Large T-Antigen Mutant Database
Mutations in SV40 large tumor antigen gene
database   summary

SWEET-DB   Loß, Alex1, Bunsmann. P.1, Bohne, A.4, Loß, Annika1, Schwarzer, E.1, Lang, E.3, von der Lieth, C.-W.4
Annotated carbohydrate structure and substance information
database   summary

SWISS-2DPAGE
Annotated two-dimensional polyacrylamide gel electrophoresis database
database   summary

SWISS-PROT/TrEMBL
Curated protein sequences
database   summary

SYSTERS, GeneNest, SpliceNest   Krause, A., Haas, S.A., Coward, E., Vingron, M.
Integrated database of protein families, EST clusters and their genomic positions
database   summary

TESS
Transcription element search system
database   summary

The Arabidopsis Information Resource (TAIR)
Arabidopsis thaliana genome
database   summary

The HugeIndex: Human Gene Expression Index   Haverty, P.1, Weng, Z.2, Best, N.3, Auerback, K.3, Hsiao, L.3, Jensen, R.4, Gullans, S.3
mRNA expression levels of human genes in normal tissues
database   summary

The Pharmacogenomics and Pharmacogenetics Knowledge Base   Lin, S., Woon, M., Rubin, D., Oliver, D., Hewett, M, Zhou, T., Conroy, J., Fergerson, R., Altman, R., Klein, T.
Variation in drug response based on human variation
database   summary

The Phytophthora Genome Consortium Database   Waugh, M.E.1, Tyler, B.M.2, Mitchell, T.3, Houfek, T.D.3, Dean, R.A.3, Anderson, W.T.1, Inman, J.T.1, Schilkey, F.D.1, Sullivan, J.P.1, Bell, C.J.4
ESTs from Phytophthora infestans and Phytophthora sojae
database   summary

The SNP Consortium database   Thorisson, G. A., Stein, L. D.
SNP Consortium data
database   summary

The tmRNA Website
tmRNA sequences, foldings, and alignments
database   summary

The Unified Database (UDB)   Chalifa-Caspi, V, Safran, M., Lapidot, M., Rosen, N., Lancet, D.
Integrated human maps
database   summary

TIGR Gene Indices   Lee, Y., Antonescu, V., Cheung, F., Karamycheva, S., Parvizi, B., Pertea, G., Sultana, R., Sunkara, S., Tsai, J., White, J., Quackenbush, J.
Non-redundant, gene-oriented clusters
database   summary

TIGR Microbial Database
Microbual genomes and chromosomes
database   summary

TIGRFAMs
Functional identification of proteins
database   summary

tmRDB   Zwieb, C1, Gorodkin, J2, Knudsen, B3, Burks, J1, Wower, J4
tmRNA (10Sa RNA) sequences and alignments
database   summary

Tooth Development Database
Gene expression in dental tissue
database   summary

ToxoDB:The Toxoplasma gondii Genome Database   Kissinger, J.C.1, Gajria, B.2, Li, L.2, Paulsen, I.T.3, Roos, D.S.2
Apicomplexan parasite Toxoplasma gondii genome
database   summary

TRANSCompelTM   Kel-Margoulis, O.1, Kel, A.1, Reuter, I.1, Deineko, I.2, Wingender, E.1
Composite regulatory elements
database   summary

TRANSFAC®   Matys, V.1, Fricke, E.1, Geffers, R.1, Gößling, E.1, Hornischer, K.1, Kel-Margoulis, O. V.1, Kloos, D. U.1, Land, S.1, Michael, H.2, Münch, R.1, Reuter, I.1, Scheer, M.1, Thiele, S.1, Wingender, E.1, -1
Effect of transcription factors on gene expression
database   summary

Transgenic/Targeted Mutation Database
Information on transgenic animals and targeted mutations
database   summary

TRANSPATH   Krull, M., Choi, C., Pistor, S., Voss, N., Wingender, E.
Gene regulatory networks and microarray analysis
database   summary

Transterm   Jacobs, G.2, Rackham, O.1, Stockwell, P. A.1, Brown, C. M.1
Codon usage, start and stop signals
database   summary

Tree of Life
Information on phylogeny and biodiversity
database   summary

trEST, trGEN, Hits   Pagni, M.1, Falquet, L.1, Iseli, C.2, Jongeneel, V.2, Junier, T.3, Bucher, P.3
trEST and trGEN are two databases of hypothetical protein sequences. Hits is a pre-compiled list of domains/signatures predicted on them.
database   summary

TRIPLES   Kumar, A.1, Cheung, K.-H.2, Tosches, N.2, Masiar, P.2, Liu, Y.2, Miller, P.2, Snyder, M.1
TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces
database   summary

tRNA Sequences
tRNA and tRNA gene sequences
database   summary

TRRD
Transcription regulatory regions of eukaryotic genes
database   summary

Tumor Gene Family Databases (TGDBs)
Cellular, molecular, and biological data about genes involved in various cancers
database   summary

UM-BBD   Ellis, L.B.M., Wackett, L.P.
Microbial biocatalytic reactions and biodegradation pathways
database   summary

UniGene
Non-redundant, gene-oriented clusters
database   summary

UTRdb/UTRsite   Pesole, G.1, Liuni, S.2, Grillo, G.2, Licciulli, F.3, Mignone, F.1, Gissi, C.1, Saccone, C.3
5' and 3' UTRs of eukaryotic mRNAs and relevant functional patterns
database   summary

Vectordb
Characterization and classification of nucleic acid vectors
database   summary

VIDA
Virus genome open reading frames
database   summary

Virgil
Database interconnectivity
database   summary

VirOligo   Onodera, K., Melcher, U.
Virus-specific oligonucleotides for PCR and hybridization
database   summary

WILMA   Prlic, A., Domingues, F.S., Lackner, P., Sippl, M.J.
C. elegans annotation
database   summary

WIT2
Integrated system for functional curation and development of metabolic models
database   summary

Wnt Database
Wnt proteins and phenotypes
database   summary

WormBase
Guide to C. elegans biology
database   summary

XREFdb
Cross-referencing of model organism genetics with mammalian phenotypes
database   summary

Yeast snoRNA Database
Yeast small nucleolar RNAs
database   summary

YIDB
Yeast nuclear and mitochondrial intron sequences
database   summary

ZFIN   Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., Westerfield, M.
Genetic, genomic, and developmental data from zebrafish
database   summary

ZmDB
Maize genome database
database   summary

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