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Alphabetical Database List

A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z

16S and 23S Ribosomal RNA Mutation Database   Triman, K.L., Paull, D.S.

5S Ribosomal RNA Database

AAindex   Katayama, T., Kawashima, S., Kanehisa, M.

AARSDB   Szymanski, M., Barciszewski, J.

ABCdb

ACeDB

ACTIVITY

ALFRED   Rajeevan, H.¹, Osier, M.V.¹, Cheung, K.-H.², Deng, H.¹, Druskin, L.², Heinzen, R.¹, Kidd, J. R.¹, Stein, S.¹, Pakstis, A. J.¹, Tosches, N. P.², Yen, C. -C.¹, Miller, P. L.², Kidd, K. K.¹

AllGenes   Babenko, V., Brunk, B., Crabtree, J., Diskin, S., Fischer, S., Gan, Y., Li, L., Mazzarelli, J., McWeeney, S., Pinney, D., Pizarro, A., Schug, J., Stoeckert, C.

AMmtDB   Lanave C.¹, Licciulli F.², Incampo L.², Marolla A.², Attimonelli M.²

Androgen Receptor Gene Mutations Database

AraC/XylS database   Tobes, R., Martínez-Bueno, M., Ramos, J.L.

ARED   Bakheet, T.¹, Williams, B², Khabar, K.²

Ares Lab Yeast Intron Database   Telerski, A.¹, Centers, R. J.², Ares, M.²

ArkDB

ArrayExpress   Brazma, A., Parkinson, H., Sarkans, U., Shojatalab, M., Vilo, J., Abeygunawardena, N., Holloway, E., Kapushesky, M., Kemmeren, P., Garcia Lara, G., Oezcimen, A., Sansone, S., Rocca-Serra, P.

ASC - Active Sequence Collection   Angelo Facchiano¹, Antonio Facchiano², Francesco Facchiano²

ASDB

AsMamDB

ASPD   Valuev, V.P., Afonnikov D.A., Ponomarenko M.P., Kolchanov N.A.

Asthma Gene Database   Wjst M

ASTRAL   Chandonia, J. M.¹, Walker, N.², Lo Conte, L.³, Koehl, P.⁴, Levitt, M.⁴, Brenner, S. E.⁵

Atlas of Genetics and Cytogenetics in Oncology and Haematology   Huret JL¹, Dessen P², Bernheim A²

Axeldb

BAliBASE

BioImage

BioMagResBank

Biomolecular Interaction Network Database (BIND)   Bader, G.D.², Donaldson, I.⁵, Wolting, C.⁵, Ouellette, B.F.F.³, Pawson, T.², Hogue, C.W.V.²

Blocks   Henikoff, J.G.¹, Pietrokovski, S.³, Greene, E.A.¹, Taylor, N.¹, Ng, P.C.¹, Henikoff, S.²

BodyMap

BTKbase   Väliaho, J¹, Smith, C.I.E.², Vihinen, M.³

CADB: Conformational Angles DataBase of Proteins   Sheik, S.S., Ananthalakshmi, P., Ramya Bhargavi, G., Sekar, K.

CASRDB

CATH   Pearl, F.M.¹, Bennett, C.F.¹, Bray, J.E.¹, Harrison, A.P.¹, Martin, N.², Shepherd, A.¹, Sillitoe, I.¹, Thornton, J.³, Orengo, C.A.¹

CDD   Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y., Bryant, S.H.

CE

CKAAPs DB

Clusters of Orthologous Groups (COG)   Tatusov, R.L., Natale, D.A., Fedorova, N.D., Jackson, J., Jacobs, A., Krylov, D.M., Mekhedov, S.L., Nikolskaya, A.N., Rao, B.S., Wolf, Y.I., Aravind, L., Lanczycki, C., Masumder, R., Sreekumar, K., Vasudevan, S., Walker, D.R., Tatusova, T.A., Yao, K., Yin, J., Koonin, E.V.

CluSTr   Kriventseva, E.V., Servant, F., Fleischmann, W., Zdobnov, E.V., Apweiler, R.

Comprehensive Microbial Resource

CORG: A database for COmparative Regulatory Genomics   Dieterich, C., Wang, H., Rateitschak, K., Luz, H., Vingron, M.

Cre Transgenic Database

CropNet

CroW 21   Peter, Y., Chalifa-Caspi, V., Olender, T., Glusman, G., Peter, I., Safran, M., Lancet, D., Groner, Y.

CSD

CSDBase   Weber, M.H.W., Doll, N., Marahiel, M.A.

CUTG

CyanoBase

Cytokine Gene Polymorphism Database

Cytokine Gene Polymorphism in Human Disease   Bidwell, J.¹, Keen, L.¹, Haukim, N.¹, Smith, A.¹, Gallagher, G.², Kimberley, R.³, Huizinga, T.⁴, McDermott, M.⁵, Oksenberg, J.⁶, McNicholl, J.⁷, Pociot, F.⁸, Hardt, C.⁹, D'Alfonso, S.¹⁰

DAtA

Database for mobile group II introns   Dai, L., Toor, N., Olson, R., Keeping, A., Zimmerly, S.

Database of Germline p53 Mutations

Database of Interacting Proteins   Xenarios, I., Salwinski, L., Xiaoqun, JD., Higney, P., Kim, SM., Eisenberg, D.

Database of Macromolecular Movements

Database of Ribosomal Crosslinks (DRC)

DBcat

dbSNP

DBTBS   Ishii, T.¹, Yoshida, K.², Terai, G.³, Fujita, Y.², Nakai, K.⁴

Decoys 'R' Us

DExH/D Family Database

DNA Data Bank of Japan (DDBJ)   Imanishi, T.¹, Miyazaki, S.², Fukami-Kobayashi, K.², Sugawara, H.², Gojobori, T.², Tateno, Y.²

DPInteract

DRESH

DrugDB

DSDBASE   Vinayagam, A., Sowdhamini, R.

DSMM - a Database of Simulated Molecular Motions   Finocchiaro, G.², Wang, T.¹, Hoffmann, R.¹, Gonzalez, A.¹, Wade, R.C.¹

EcoCyc   Karp, P.D.¹, Collado-Vides, J.², Paulsen, I.³, Riley, M.¹, Saier, M.⁴, Paley, S.¹, Bonavides, C.², Gama-Castro, S.²

EcoGene

EID

EMBL Nucleotide Sequence Database

EMGlib

eMOTIF

Endogenous GPCR List

ENZYME

EPConDB   Pizarro, A.¹, Pinney, D.¹, Crabtree, J.¹, Mazzarelli, J.¹, Grant, G.¹, Le, P.¹, Manduchi, E.¹, McWeeney, S.¹, Scearce, M.², Brestelli, J.², Brownstein, B.³, Clifton, S.⁴, Inoue, H.⁵, Pape, D.⁴, Melton, D.⁶, Permutt, A.⁵, Kaestner, K.², Stoeckert, C.²

EPD   Cavin Périer, R.¹, Praz, V.², Bucher, P.²

EpoDB

ESTHER   Cousin, X.¹, Hotelier, T.², Marton, P.¹, Chatonnet, A.¹

ExInt

EXProt   Ursing, B.M., van Enckevort, F.H.J., Leunissen, J.A.M., Siezen, R.J.

FIMM

FLAGdb/FST   Samson, F.¹, Brunaud, V.¹, Balzergue, S.¹, Dubreucq, B.², Lepiniec, L.², Pelletier, G.³, Caboche, M.¹, Lecharny, A.¹

FlyBase

FlyView

Full-Malaria   Watanabe, J.¹, Sasaki, M.², Suzuki, Y.², Sugano, S.²

FUNPEP

G3-RH

GB4-RH

GDB

GELBANK   Babnigg, G., Giometti, C.S.

GenAtlas

GenBank

Gene Expression Database (GXD)   Ringwald,M., Eppig,J.T., Begley,D.A., Hayamizu,T.F., Hill,D.P., McCright,I.J., Smith,C.M., Kadin,J.A., Richardson,J.E.

Gene Ontology Annotation (GOA)   Camon, E.B., Barrell, D., Binns, D., Fleischmann, W., Kersey, P., Magrane, M., Maslen, J., Mulder, N., Harte, N., Apweiler, R.

Gene Resource Locator   Honkura, T.¹, Ogasawara, J.², Yamada, T.¹, Morishita, S.¹

GeneCards   Safran, M., Chalifa-Caspi, V., Shmueli, O., Lapidot, M., Rosen, N., Shmoish, M., Adato, A., Peter, I., Lancet, D.

GeneMap '99

Genetpig   Karsenty, E.¹, Barillot, E.¹, Tosser-Klopp, G.⁴, Lahbib-Mansais, Y.⁴, Hatey, F.⁴, Cirera, S.⁵, Sawera, M.⁵, Jørgensen, C.⁵, Chowdhary, B.⁵, Fredholm, M.⁵, Wimmers, K.⁷, Ponsuksili, S.⁷, Davoli, R.⁸, Fontanesi, L.⁸, Braglia, S.⁸, Zambonelli, P.⁸, Bigi, D.⁸, Neuenschwander, S.⁹, Gellin, J.⁴

Genew: The Human Gene Nomenclature Database   Wain,H.M., Lush,M., Ducluzeau,F., Povey,S.

GenMapDB   Morley, M¹, Burdick, J¹, Cheung, VG²

GénoPlante-Info   Samson, D., Legeai, F., Karsenty, E., Reboux, S., Veyrieras, J.-B., Just, J., Barillot, E.

GenProtEC   Riley, M., Serres, M.H., Liang, P., Sun, Y.

Global Image Database

GlycoSuiteDB   Cooper, C., Joshi, H., Harrison, M., Wilkins, M., Packer, N.

GOBASE

GOLD

GOLD.db (Genomics Of Lipid-associated Disorders)   Hackl, H., Trost, E., Maurer, M., Miranda-Saavedra, D., Stocker, G., Trajanoski, Z.

GPCRDB

GRAP Mutant Databases

GTOP   Fukuchi, S., Homma, K., Sakamoto, S., Nishikawa, K.

Guide RNA Database

Haemophila B Mutation Database

HCForum

Het-PDB Navi.   Yamaguchi, A.¹, Tomoda, S.², Yura, K.³, Go, M.¹

HGT-DB, Horizontal Gene Transfer-DataBase   Garcia-Vallve, S., Guzman, E, Montero, MA., Romeu, A.

HGVbase   Fredman, D.¹, Lehvaslaiho, H.², Rios, D.¹, Munns, G.¹, Siegfried, M.¹, Yuan, Y.P.³, Bork, P.³, Brookes, A.J.¹

HIC-Up

Histone Database   Sullivan, S.¹, Sink, D.W.², Trout, K.L.², Makalowska, I.², Taylor, P.M.¹, Baxevanis, A.D.², Landsman, D.¹

HIV Molecular Immunology Database

HIV RT and Protease Sequence Database   Rhee, S.-Y., Gonzales, M.J., Kantor, R., Betts, B.J., Ravela, J., Shafer, R.W.

HIV Sequence Database

HIV-RT

Homeobox Page

Homeodomain Resource

Homophila   Gribskov, M.¹, Bier, E.², Reiter, L.T.³, Chien, S.⁴

HOWDY   Koike, T., Tsurumine, M., Inoue, A., Uchida, N., Kuroda, M.

HOX-PRO

HS3D   Pollastro, P., Rampone, S.

HSSP

HUGE

HuGeMap

Human BAC Ends Database

Human Gene Mutation Database (HGMD)

Human Olfactory Receptor Data Exploratorium (HORDE)   Olender, T., Glusman, G., Feldmesser, E., Khen, M., Atarot, T., Safra, M., Lancet, D.

Human p53, human hprt, rodent lacI and rodent lacZ databases

Human PAX2 Allelic Variant Database

Human PAX6 Allelic Variant Database

Human Type I and Type III Collagen Mutation Database   Dalgleish, R.

HUNT   Yudate, HT.¹, Suwa, M.², Irie, R.¹, Matsui, H.³, Nishikawa, T.⁴, Nakamura, Y.¹, Yamaguchi, D.⁵, Zhang, Z.¹, Yamamoto, T.¹, Nagai, K.¹, Hayashi, K.¹, Otsuki, T.¹, Sugiyama, T.¹, Ota, T.¹, Suzuki, Y.⁶, Sugano, S.⁶, Isogai, T.¹, Masuho, Y.¹

HvrBase   Radtke, A., Rupp, K., Voelpel, K., von Haeseler, A., Meyer, S.

HyPaLib

IARC TP53 Database   Olivier, M.

ICB

IDB/IEDB

IMB Jena Image Library of Biological Macromolecules   Reichert, J., Suehnel, J.

IMGT   Lefranc, M.-P.

IMGT/HLA   Robinson, J.¹, Waller, MJ.¹, Parham, P.², Stoehr, P.³, Marsh, SGE.¹

IMGT/MHC Database   Robinson, J¹, Waller, MJ¹, de Groot, N², Bontrop, R², Kennedy, L³, Marsh, SGE¹

Imprinted Genes and Parent-of-Origin Effects

InBase   Perler, F.B.

INE   Sakata,K.², Mukai,Y.¹, Antonio,B.¹, Namiki,N.¹, Sakai,Y.², Makino,K.², Matsumoto,T.¹, Sasaki,T.¹

Interferon Stimulated Gene Database

International Rice Information System   McLaren, CG, Bruskiewich, RM

InterPro   Mulder, N.J.¹, Apweiler, R.¹, Attwood, T.K.², Bairoch, A.³, Bateman, A.⁴, Binns, D.¹, Biswas, M.¹⁰, Bradley, P.¹, Bork, P.⁸, Bucher, P.⁵, Copley, R.R.¹¹, Courcelle, E.⁶, Das, U.¹, Durbin, R.⁴, Falquet, L.⁵, Fleischmann, W.¹, Griffiths-Jones, S.⁴, Haft, D.⁹, Harte, N.¹, Hermjakob, H.¹, Hulo, N.³, Kahn, D.⁶, Kanapin, A.¹, Krestyaninova, M.¹, Lopez, R.¹, Letunic, I.⁸, Lonsdale, D.¹, Silventoinen, V.¹, Orchard, S.E.¹, Pagni, M.⁵, Peyruc, D.⁶, Ponting, C.P.⁷, Selengut, J.D.⁹, Servant, F.¹, Sigrist, C.J.A.³, Vaughan, R.¹, Zdobnov, E.M.⁸

Intronerator

iProClass   Wu, C.H.¹, Huang, H.¹, Chen, Y.², Barker, W.C.²

IRESdb : the Internal Ribosome Entry Site database   Bonnal, S., Boutonnet, C., Prado-Lourenco, L., Vagner, S.

ISSD

IXDB

JenPep   McSparron, H, Blythe, MJ, Zygouri, C, Doytchinova, IA, Flower, DR

Kabat Database

KEYnet

Kidney Development Database

KinMutBase

Klotho

KMDB

Kyoto Encyclopedia of Genes and Genomes (KEGG)

LGICdb

LIGAND   Goto, S.¹, Okuno, Y.¹, Hattori, M.¹, Nishioka, T.², Kanehisa, M.¹

Lipase Engineering Database   Fischer, M., Pleiss, J.

LPFC

MAGEST

Medicago Genome Initiative (MGI)   Waugh, M.¹, Anderson, W.¹, Bell, C.², Inman, J.¹, Schilkey, F.¹, Sullivan, J.¹, May, G.³

Mendel Database

MEPD: A Medaka gene expression pattern database   Henrich, T.¹, Ramialison, M.¹, Quiring, R.², Wittbrodt, B.², Furutani-Seiki, M.¹, Wittbrodt, J.², Kondoh, H.¹

MEROPS   Rawlings, N.D., Tolle, D.P., Barrett, A.J.

MetaCyc   Karp, P. D., Riley, M.

MetaFam

Metalloprotein Database and Browser   Castagnetto, J.M., Hennessy, S.W., Roberts, V.A., Getzoff, E.D., Tainer, J.A., Pique, M.E.

MethDB   Grunau, C.¹, Renault, E.¹, Hindermann, W.², Roizes, G.¹

MHC-Peptide Interaction Database   Ranganathan, S.¹, Govindarajan, K.R.¹, Kangueane, P.², Tan, T.W.¹

MHCPEP

MICdb: Database of Prokaryotic Microsatellites   Sreenu B. Vattipally¹, Vishwanath Alevoor¹, Nagaraju, Javaregowda², Nagarajaram A. Hampapathalu¹

MitBASE

MitoDat

MITOMAP

MitoNuc/MitoAln   Attimonelli, M.¹, Catalano, D.¹, Gissi, C.², Grillo, G.³, Licciulli, F.¹, Liuni, S.³, Pesole, G.², Saccone, C.¹

MITOP

MMDB

ModBase   Pieper, U., Eswar, N., Stuart, A.C., Ilyin, V.A., Sali, A.

Mouse Atlas and Gene Expression Database

Mouse Genome Database (MGD)   Blake, J.A., Eppig, J.T., Richardson, J.E., Bult, C.J., Kadin, J.A., Mouse Genome Database Group

Mouse Tumor Biology Database (MTB)   Bult, C.J., Krupke, D.M, Naf, D., Sundberg, J.P., Eppig, J.T.

MPDB   Marra, D.

Munich Information Center for Protein Sequences (MIPS)   Mewes, H. W., Warfsmann, J., Kolesov, G., Gueldener, U., Mannhaupt, G., Frishman, D.

Mutation Spectra Database

NCBI Taxonomy Browser

NCIR   Nagaswamy, U., Larios-Sanz, M., Hury, J., Wang, J., Kalaimani, K., Zhao, Q., Fox, G. E.

NCL Mutations

NDB

NESbase 1.0   la Cour, T.², Gupta, R.¹, Rapacki, K.¹, Skriver, K.², Poulsen, F. M.², Brunak, S.¹

NLSdb   Nair, Rajesh², Carter, Phil¹, Rost, Burkhard³

Noncoding regulatory RNAs database   Szymanski, M.¹, Erdmann, V.A.², Barciszewski, J.¹

NRSub

NTDB   Chiu, W. L. A. K., Sze, C. N., Ma, N. T., Chiu, L. F., Leung, C. W., Au-Yeung, S. C. F.

Nuclear Protein Database (NPD)   Dellaire, G.¹, Farrall, R.², Bickmore, W.A.²

Nuclear Receptor Resource   Danielsen, M., Martinez, E.

NUREBASE   Duarte, J.¹, Ourjdal, T.¹, Perriere, G.², Laudet, V.¹, Robinson-Rechavi, M.¹

O-GLYCBASE   Julenius, K., Rapacki, K., Brunak, S., Gupta, R.

Olfactory Receptor Database

Online Mendelian Inheritance in Man

ooTFD   Ghosh, D

Oral Cancer Gene Database

Oryzabase   Yamazaki, Y.¹, Yoshimura, A.³, Nagato, Y.², Yamakawa, T.¹, Kurata, N.⁴

PAHdb

PALI   Gowri, V.S., Pandit, S.B., Karthik, P.S., Srinivasan, N., Balaji, S.

PASS2   Chakrabarti, Saikat¹, Venkataramanan, K², Sowdhamini, Ramanathan¹

PathDB   Kuffner, R.M., Gonzales, M., Steadman, P., Wlodek, D.K., Jankowitz, R.J., Boinoff, J.R., MontoyA, L., Peterson, T.F., Bulmore, D.L., Blanchad, J.B.

PDB

PDB-REPRDB   Noguchi, T., Akiyama, Y.

PDBsum   Laskowski, R.A.

PEDANT genome database   Frishman, D.¹, Mokrejs, M.¹, Kosykh, D.¹, Kastenmüller, G.¹, Kolesov, G.¹, Zubrzycki, I.¹, Gruber, C.², Geier, B.², Kaps, A.², Albermann, K.², Volz, A.², Wagner, C.², Fellenberg, M.², Heumann, K.², Mewes, H.-W.³

PEDB

PEP: Predictions for Entire Proteomes   Carter, P.¹, Liu, J.², Rost, B.¹

Peptaibol

Pfam

PHEXdb   Sabbagh, Y.¹, Tenenhouse, H.S.²

PhosphoBase

PIR-ALN

PIR-NREF   Huang, H.¹, Suzek, B.E.², Wu, C.H.¹

PKR

PLACE   Higo, K.

PLANT-PIs   De Leo F.¹, Volpicella M.¹, Licciulli F.², Liuni S.³, Gallerani R.¹, Ceci L.R.³

PlantCARE   Rombauts, S.¹, Bonnet, E.¹, Thijs, G.³, Marchal, K.³, Moreau, Y.³, Van de Peer, Y.¹, Rouze, P.²

PlantGDB   Shannon D. Schlueter, Qunfeng Dong, Volker Brendel

PLANTncRNAs   MacIntosh, G.C.¹, Macalincag, M-C.P.¹, Green, P.J.²

PlantsP/PlantsT   Tchieu, J.², Fana, F.¹, Fink, J.L.¹, Harper, J.³, Nair, M.², Niedner, R.H.¹, Smith, D.W.², Steube, K.¹, Tam, T.¹, Veretnik, S.¹, Wang, D.¹, Gribskov, M.¹

PlasmoDB   Bahl, A.¹, Brunk, B.², Coppel, R. L.³, Crabtree, J.², Diskin, S. J.², Fraunholz, M. J.¹, Grant, G. R.², Gupta, D.¹, Huestis, R. L.³, Kissinger, J. C.¹, Labo, P.¹, Li, L.¹, McWeeney, S. K.², Milgram, A. J.¹, Roos, D. S.¹, Schug, J.², Stoeckert, C. J. Jr.²

PLMItRNA   Guglielmo Rainaldi¹, Mariateresa Volpicella¹, Flavio Licciulli², Sabino Liuni², Raffaele Gallerani¹, Luigi Ruggiero Ceci²

PMD

PPMdb

PRESAGE   Smith, A.¹, Barken, D.¹, Levitt, M.², Brenner, S. E.¹

PRINTS   Attwood, T.K¹, Blythe, M.J.³, Flower, D.R.³, Gaulton, A.¹, Mabey, J.E.¹, Maudling, N.¹, McGregor, L.⁴, Mitchell, A.², Moulton, G.¹, Paine, K.³, Scordis, P.¹

probeBase   Horn, M., Loy, A., Wagner, M.

ProClass

ProDom   Kahn D., Courcelle E., Gouzy J.

Prolysis

PromEC

PROMISE

PROSITE   Falquet, L.¹, Pagni, M.¹, Bucher, P.², Bairoch, A.³, Hulo, N.³, Sigrist, C.J.A.³, Hofmann, K.⁴

Protein Information Resource (PIR)   Wu, C.H.¹, Huang, H.¹, Yeh, L.S.², Hu, Z.Z.², Barker, W.C.²

Proteome Analysis Database   Apweiler, R.¹, Fleischmann, W.¹, Kanapin, A.¹, Karavidopoulou, Y.¹, Kersey, P.¹, Kriventseva, E.V.¹, Mittard,¹, Mulder, N.¹, Phan, I.², Pruess, M.¹, Servant, F.¹

Proteome BioKnowledge Library   Costanzo, M.C., Arnaud, M.B., Csank, C.J., Hirschman, J.E., Kranz, J.E., Olsen, P., Robertson, L.S., Skrzypek, M.S., Kondu, P., Lengieza, C., Tillberg, M., Garrels, J.I.

ProTherm

ProtoMap

PseudoBase   Batenburg,F.H.D.van¹, Gultyaev,A.P.¹, Pleij,C.W.A.²

PTCH1 Mutation Database

PubMed

Rat Genome Database   Twigger, S.N.¹, Shimoyama, M.¹, Lu, J.¹, Pasko, D.¹, Bromberg, S.¹, Chen, C.F.¹, Chen, J.¹, Gopinathrao, G.¹, Nigam, R.¹, Ramachandran, H.¹, Mathis, J.¹, Nie, J.¹, Maltais, L.², Eppig, J.T.², Maglott, D.³, Schuler, G.³, Jacob, H.J⁴, Tonellato, P.J.¹

RB1 Gene Mutation Database

REBASE

RECODE

RefSeq   Pruitt, K.D, Maglott, D.R.

RegulonDB

RESID

Rfam   Griffiths-Jones, S.¹, Bateman, A.¹, Marshall, M.¹, Khanna, A.², Eddy, S.R.²

RHdb

Ribonuclease P Database

Ribosomal Database Project (RDP-II)   Cole, J.R.¹, Chai, B.¹, Wang, Q.¹, Chandra, S.¹, Farris, R.J.¹, Kulam, S.A.¹, McGarrel, D.M.¹, Schmidt, T.M.², Garrity, G.M.², Tiedje, J.M.²

Ribosomal Differentiation of Medical Microorganisms (RIDOM)   Harmsen, D.¹, Rothgänger, J.², Sammeth, M.², Albert, J.²

RiceGAAS   Sakata, K.¹, Numa, H.¹, Nagamura, Y.¹, Antonio, B.A.², Idonuma, A.², Shimizu, Y.³, Horiuchi, I.³, Matsumoto, T.¹, Sasaki, T.¹, Higo, K.¹

RISCC

RNA Modification Database

RNABase   Murthy, V.L., Rose, G.D.

RRNDB

RsGDB

rSNP Guide

RTPrimerDB   Pattyn, F., Speleman, F., De Paepe, A., Vandesompele, J.

S/MARt DB   Liebich, I.¹, Christensen, M.¹, Wingender, E.²

Saccharomyces Genome Database   Dolinski, K., Balakrishnan, R., Christie, K., Costanzo, M., Dwight, S., Engel, S., Fisk, D., Hong, E., Issel-Tarver, L., Sethuraman, A., Theesfeld, C., Binkely, G., Lane, C., Schroeder, M., Dong, S., Kaloper, M., Weng, S., Andrada, R., Botstein, D., Cherry, J.M.

SBASE   Vlahovicek, K¹, Kajan, L¹, Murvai, J², Pongor, S¹

SCOP   Lo Conte, L.¹, Brenner, S.E.², Hubbard, T.J.P.³, Chothia, C.¹, Murzin, A.G.⁴

SCOR   Klosterman, P. S.¹, Holbrook, S. R.², Brenner, S. E.¹

SDAP   Ivanciuc, O., Schein, C.H., Braun, W.

SELEXdb

SENTRA

SEVENS   Suwa, M.¹, Sato, T.², Okouchi, I..², Arita, M.¹, Matsumoto, S.³, Tsutsumi, S.³, Aburatani, H.³, Asai, K.¹, Akiya, Y.¹

SLoop

Small RNA Database

SMART   Letunic, I.¹, Goodstadt, L.², Dickens, NJ.², Doerks, T.¹, Schultz, J.³, Ciccarelli, F.¹, Copley, RR.¹, Ponting, CP.², Bork, P.¹

SOURCE   Diehn, M.¹, Sherlock, G.², Binkley, G.², Jin, H.², Matese, J.C.², Hernandez-Boussard, T.², Rees, C.A.², Cherry, J.M.², Botstein, D.², Brown, P.O.³, Alizadeh, A.A.¹

SpliceDB

SRPDB   Alm Rosenblad, M.¹, Gorodkin, J.², Knudsen, B.³, Zwieb, C.⁴, Samuelsson, T.¹

STACK

Stanford Microarray Database   Gollub, G.¹, Ball, C.A.¹, Binkley, G.², Demeter, J.¹, Finkelstein, D.B.³, Hebert, J.M.⁴, Hernandez-Boussard, T.¹, Jin, H.¹, Kaloper, M.², Matese, J.C.¹, Schroeder, M.², Brown, P.O.⁵, Botstein, D.², Sherlock, G.¹

STRBase

SubtiList   Moszer, I.¹, Jones, L.M.², Moreira, S.¹, Fabry, C.¹, Danchin, A.³

Subviral RNA Database

SUPERFAMILY   Gough, J., Chothia, C.

SUPFAM   Pandit, S.B.¹, Balaji, S.¹, Gowri, V.S.¹, Abhinandan, K.R.¹, Vaishnavi, R.², Srinivasan, N.¹

SV40 Large T-Antigen Mutant Database

SWEET-DB   Loß, Alex¹, Bunsmann. P.¹, Bohne, A.⁴, Loß, Annika¹, Schwarzer, E.¹, Lang, E.³, von der Lieth, C.-W.⁴

SWISS-2DPAGE

SWISS-PROT/TrEMBL

SYSTERS, GeneNest, SpliceNest   Krause, A., Haas, S.A., Coward, E., Vingron, M.

TESS

The Arabidopsis Information Resource (TAIR)

The HugeIndex: Human Gene Expression Index   Haverty, P.¹, Weng, Z.², Best, N.³, Auerback, K.³, Hsiao, L.³, Jensen, R.⁴, Gullans, S.³

The Pharmacogenomics and Pharmacogenetics Knowledge Base   Lin, S., Woon, M., Rubin, D., Oliver, D., Hewett, M, Zhou, T., Conroy, J., Fergerson, R., Altman, R., Klein, T.

The Phytophthora Genome Consortium Database   Waugh, M.E.¹, Tyler, B.M.², Mitchell, T.³, Houfek, T.D.³, Dean, R.A.³, Anderson, W.T.¹, Inman, J.T.¹, Schilkey, F.D.¹, Sullivan, J.P.¹, Bell, C.J.⁴

The SNP Consortium database   Thorisson, G. A., Stein, L. D.

The tmRNA Website

The Unified Database (UDB)   Chalifa-Caspi, V, Safran, M., Lapidot, M., Rosen, N., Lancet, D.

TIGR Gene Indices   Lee, Y., Antonescu, V., Cheung, F., Karamycheva, S., Parvizi, B., Pertea, G., Sultana, R., Sunkara, S., Tsai, J., White, J., Quackenbush, J.

TIGR Microbial Database

TIGRFAMs

tmRDB   Zwieb, C¹, Gorodkin, J², Knudsen, B³, Burks, J¹, Wower, J⁴

Tooth Development Database

ToxoDB:The Toxoplasma gondii Genome Database   Kissinger, J.C.¹, Gajria, B.², Li, L.², Paulsen, I.T.³, Roos, D.S.²

TRANSCompelTM   Kel-Margoulis, O.¹, Kel, A.¹, Reuter, I.¹, Deineko, I.², Wingender, E.¹

TRANSFAC®   Matys, V.¹, Fricke, E.¹, Geffers, R.¹, Gößling, E.¹, Hornischer, K.¹, Kel-Margoulis, O. V.¹, Kloos, D. U.¹, Land, S.¹, Michael, H.², Münch, R.¹, Reuter, I.¹, Scheer, M.¹, Thiele, S.¹, Wingender, E.¹, -¹

Transgenic/Targeted Mutation Database

TRANSPATH   Krull, M., Choi, C., Pistor, S., Voss, N., Wingender, E.

Transterm   Jacobs, G.², Rackham, O.¹, Stockwell, P. A.¹, Brown, C. M.¹

Tree of Life

trEST, trGEN, Hits   Pagni, M.¹, Falquet, L.¹, Iseli, C.², Jongeneel, V.², Junier, T.³, Bucher, P.³

TRIPLES   Kumar, A.¹, Cheung, K.-H.², Tosches, N.², Masiar, P.², Liu, Y.², Miller, P.², Snyder, M.¹

tRNA Sequences

TRRD

Tumor Gene Family Databases (TGDBs)

UM-BBD   Ellis, L.B.M., Wackett, L.P.

UniGene

UTRdb/UTRsite   Pesole, G.¹, Liuni, S.², Grillo, G.², Licciulli, F.³, Mignone, F.¹, Gissi, C.¹, Saccone, C.³

Vectordb

VIDA

Virgil

VirOligo   Onodera, K., Melcher, U.

WILMA   Prlic, A., Domingues, F.S., Lackner, P., Sippl, M.J.

WIT2

Wnt Database

WormBase

XREFdb

Yeast snoRNA Database

YIDB

ZFIN   Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., Westerfield, M.

ZmDB