Go to the abstract in the NAR 2003 Database Issue.
 |
 |
|||||||
|
||||||||
http://www.infobiogen.fr/services/Genetpig
Karsenty, E.1, Barillot, E.1, Tosser-Klopp, G.4, Lahbib-Mansais, Y.4, Hatey, F.4, Cirera, S.5, Sawera, M.5, Jørgensen, C.5, Chowdhary, B.5, Fredholm, M.5, Wimmers, K.7, Ponsuksili, S.7, Davoli, R.8, Fontanesi, L.8, Braglia, S.8, Zambonelli, P.8, Bigi, D.8, Neuenschwander, S.9, Gellin, J.4
1Infobiogen, 523 place des terrasses, F-91000 Evry, France
4Laboratoire de Génétique Cellulaire, INRA, 31326 Castanet-Tolosan, BP27, France
5The Royal Veterinary and Agricultural University, Department of Animal Science and Animal Health, Division of Animal Genetics, Buelowsvej 13, Copenhagen, Frederiksberg C, Denmark
7Institute of Animal Breeding Science, University of Bonn, Endenicher Allee 15, D-53115 Bonn, Germany
8Bologna University, DIPROVAL Sez. Allevamenti Zootecnici, Via F.lli Rosselli, 107, 42100 Coviolo - Reggio Emilia, Italy
9Institut für Nutztierwissenschaften, Tannenstrasse 1, ETH-Zentrum, CH-8092 Zürich, Switzerland
Contact manu@infobiogen.fr
The Genetpig database has been established for storing the results of the European project: 'Genetpig: Identification of genes controlling economic traits in pig'. The partners of this project have mapped about 630 porcine and human ESTs onto the pig genome. The database collects the mapping results and links them to other sources of mapping data; this includes pig maps as well as comparative mapping results. Functional annotation of the mapped ESTs was also given when a significant similarity to cognate genes was established. The database is accessible for consultation via the Internet at http://www.infobiogen.fr/services/Genetpig/.
We thank Eric Viara for his support in developing the Genetpig environment, Frédéric Guyon for his help in adapting and using the graphical interface, and Christophe Cussat-Blanc for system management. The Genetpig project was funded by the European Commission BIO4-CT98-0237 contract.
Blake, J.A., Richardson, J.E., Bult, C.J., Kadin, J.A., Eppig, J.T. and
the Mouse Genome Database Group (2002) The Mouse Genome Database (MGD):
The model organism database for the laboratory mouse. Nucleic Acids
Res., 30, 113-115.
Goureau A., Yerle M., Schmitz A., Riquet J., Milan D., Pinton P., Frelat
G. and Gellin J. (1996). Human and porcine correspondence of chromosome
segments using bidirectional chromosome painting. Genomics, 36, 252-262.
Robic, A., Riquet, J., Yerle, M., Milan, D., Lahbib-Mansais, Y.,
Dubut-Fontana, C. and Gellin, J. (1996). Porcine linkage and cytogenetic
maps integrated by regional mapping of 100 microsatellites on somatic
cell hybrid panel. Mamm. Genome, 7, 438-45.
Yerle, M., Echard, G., Robic, A., Mairal, A., Dubut-Fontana, C., Riquet,
J., Pinton, P., Milan, D., Lahbib-Mansais, Y. and Gellin, J. (1996) A
somatic cell hybrid panel for pig regional gene mapping characterized by
molecular cytogenetics. Cytogenet Cell Genet., 73, 194-202.
Yerle, M., Pinton, P., Robic, A., Alfonso, A., Palvadeau, Y., Delcros,
C., Hawken, R., Alexander, L., Beattie, L.B., Milan, D. and Gellin, J.
(1998) Construction of a whole genome radiation hybrid panel for
high-resolution gene mapping in pigs. Cytogenetics and Cell Genetics,
82, 182-188.
Hawken, R.J., Murtaugh, J., Flickinger, G.H., Yerle, M., Robic, A.,
Milan, D., Gellin, J., Beattie, C.W., Schook, L.B., and Alexander, L.J.
(1999) A First Generation Porcine Whole Genome Radiation Hybrid Map.
Mamm. Genome, 10, 824-30. ;
Milan, D., Hawken, R, Cabau, C., Leroux, S., Genet, C., Lahbib, Y.,
Tosser, G., Robic, A., Hatey, F., Alexander, L., Beattie, C., Schook,
L., Yerle, M. and Gellin, J. (2000) IMpRH server: an RH mapping server
available on the Web. Bioinformatics, 6, 558-9.
Lahbib-Mansais, Y., Dalias, G., Milan, D., Yerle, M., Robic, A., Gyapay,
G. and Gellin, J. (1999) A successful strategy for comparative mapping
with human ESTs: 65 new regional assignments in the pig. Mamm. Genome,
10, 145-53.
Jiang, Z., Priat, C. and Galibert, F. (1998) Traced orthologous
amplified sequence tags (TOASTs) and mammalian comparative maps. Mamm.
Genome, 9, 577-87.
Lahbib-Mansais, Y., Leroux, S., Milan, D., Yerle, M., Robic, A., Jiang,
Z., Andre, C. and Gellin., J. (2000) Comparative mapping between humans
and pigs: localization of 58 anchorage markers (TOASTs) by use of
porcine somatic cell and radiation hybrid panels. Mamm. Genome, 11,
1098-1106.
Clouscard-Martinato, C., Mulsant, P., Robic, A., Bonnet, A., Gasser, F.
and Hatey, F. (1998) Characterization of FSH-regulated genes isolated by
mRNA differential display from pig ovarian granulosa cells. Anim.
Genet., 29, 98-106.
Lahbib-Mansais, Y., Tosser-Klopp, G., Leroux, S., Cabau, C., Karsenty,
E., Milan, D., Barillot, E., Yerle, M., Hatey, F. and Gellin, J. (in
preparation) Contribution to High-resolution mapping in pigs with 101
Type I markers and Progress in comparative map between Humans and Pigs.
Cirera, S., Jørgensen, C. B. , Sawera, M., Raudsep, T., Chowdhary, B.
and Fredholm, M. (in preparation) Comparative mapping in the pig:
localization of 218 expressed sequence tagged sites.
Ponsuksili, S., Wimmers, K., Yerle, M. and Schellander, K. (2001)
Mapping of 93 porcine ESTs preferentially expressed in liver. Mamm.
Genome, 12, 869-872.
Davoli, R., Bigi, D., Fontanesi, L., Zambonelli, P., Yerle, M.,
Zijlstra, C., Bosma, A.A., Robic, A. and Russo, V. (2000) Mapping of 14
expressed sequence tags (ESTs) from porcine skeletal muscle by somatic
cell hybrid analysis. Anim Genet, 31, 400-403.
Davoli, R., Fontanesi, L., Zambonelli, P., Bigi, D., Gellin, J., Yerle,
M., Milc, J., Braglia, S., Cenci, V., Cagnazzo, M. and Russo, V. (2002)
Isolation of porcine expressed sequence tags for the construction of a
first genomic transcript map of the skeletal muscle in pig. Anim Genet,
33, 3-18.
Yerle, M., Lahbib-Mansais, Y., Robic, A., Pinton, P., Goureau, A.,
Milan, D. and Gellin J. (1997) The cytogenetic map of the Pig (Sus
Scrofa Domestica). Mamm. Genome, 8, 592-607.
Guyon, F., Vaysseix, G. and Barillot, E. (2000) MappetShow: Non-Linear
Visualization for genome data. Pacific Symposium on Biocomputing,
Hawaii, 215-226.
Wain, H.M., Lush M., Ducluzeau, F. and Povey, S. (2002) Genew: The Human
Gene Nomenclature Database. Nucleic Acids Res., 30, 169-171.
Wheeler, D.L., Church, D.M., Lash, A.E., Leipe, D.D., Madden, T.L.,
Pontius, J.U. Schuler, G.D., Schriml, L.M., Tatusova, T.A., Wagner, L.
and Rapp, B.A. (2002) Database resources of the National Center for
Biotechnology Information: 2002 update. Nucleic Acids Res., 30, 13-16.
Stoesser, G., Baker, W., van den Broek, A., Camon, E., Garcia-Pastor,
M., Kanz, C., Kulikova, T., Leinonen, R., Lin, Q., Lombard, V. Lopez,
R., Redaschi, N., Stoehr, P., Tuli, M.A., Tzouvara, K. and Vaughan , R.
(2002) The EMBL Nucleotide Sequence Database. Nucleic Acids Res., 30,
21-26.
Viara, E., Barillot, E. and Vaysseix, G. (1999) The EyeDB OODBMS.
International Database Engineering and Applications Symposium, Montreal,
IEEE publications, 390-402.
Category Genetic and Physical Maps
Go to the abstract in the NAR 2003 Database Issue.