3rd South East Asian Training Course on Bioinformatics Applied to Tropical Diseaes Sept 28-Oct 11, 2004, International Centre for Genetic Engineering and Biotechnology (ICGEB) New Delhi, India

Lecture: Overview of TDR pathogens and Vector Genomes (aka: Vector-Parasite Databases)
            Chuong Huynh

• Reading: Malaria Parasite: Genomes and Molecular Biology Ed. A.P. Waters and C.J. Janse 2004: Chapter 3: Getting the Most Out of Bioinformatics Resources (pg 65-99) Kissinger & Roos
• Methods in Molecular Biology, Vol. 270: Parasite Genomics Protocols Ed. S.E. Melville 2004: Chapter3: Parasite Genome Databases and Web-based Resources (pg 45-74) by Hertz-Fowler and Hall.
• http://nar.oupjournals.org/content/vol32/suppl_1/ - Free 2004 Nucleic Acid Research Database Issue
  • The Molecular Biology Database Collection: 2004 Update - PDF
• http://nar.oupjournals.org/content/vol32/suppl_2/index.shtml - Free 2004 Nucleic Acid Research Web Server Issue
• Mosquito Related Resources
  • Anopheles - Anobase.org
  • Anopheles GenePlot CD-Rom
  • NCBI Anopheles Maps
  • Ensembl - Anopheles
  • Mosquito Genome WWW Server
• Tse-tse Fly
  • GeneDB Glossina site
• Triatominae
• Nematodes
  • Nembase: Nematode Genomics - http://www.nematodes.net/
• Schistosoma
  • S. mansoni EST Project - http://verjo18.iq.usp.br/schisto/
• Leishmania
  • Leishmania major (Friedlin)
    • Sanger site - http://www.sanger.ac.uk/Projects/L_major/
    • GeneDB - http://www.genedb.org/genedb/leish/index.jsp
  • <space_holder>
• Malaria Related Resources
  • PlasmoDB - http://plasmodb.org/
  • PlasmoDB Quick Reference Front / Back - PDF
  • PlasmoDB_NAR paper - PDF
  • PlasmoDB_Nature paper - PDF
  • Tutorial - http://www.plasmodb.org/Lessons/Tutorial.shtml
• Trypanosoma -
  • T. cruzi
    • Tcruzidb - http://tcruzidb.org/
  • T. brucei
    • GeneDB: http://www.genedb.org/genedb/tryp/index.jsp
    • Sanger T. brucei Genome Project: http://www.sanger.ac.uk/Projects/T_brucei/
    • Trypanosoma brucei Functional Genomics Project
• Microbial Genomics
  • NCBI Microbial Genomes - http://www.ncbi.nlm.nih.gov/genomes/MICROBES/Complete.html
  • Tuberculosis - http://genolist.pasteur.fr/TubercuList/
• Viral Genomics
  • NCBI Viral Genomes - http://www.ncbi.nlm.nih.gov/genomes/VIRUSES/viruses.html
  • ICTVdb Index of Viruses - http://www.ncbi.nlm.nih.gov/ICTVdb/Ictv/ICTVindex.htm
  • Virus: Dengue
• Giardia - http://www.mbl.edu/Giardia
• Toxoplasma
  • ToxoDB - http://toxodb.org/
  • ToxoDB - PDF
• Lecture --- DB_VectorParasite_del2004.ppt
  • SyncPowerpoint Presentation
• <space_holder>

Last Revised: Wednesday, September 29, 2004 22:49 EST

Last updated: Wednesday, September 29, 2004 22:49 (Delhi Time GMT+5:30)