NAR Database Issue

ASC - Active Sequence Collection Angelo Facchiano¹, Antonio Facchiano², Francesco Facchiano²

Bbiologically-active short amino acid sequences
database summary

Blocks Henikoff, J.G.¹, Pietrokovski, S.³, Greene, E.A.¹, Taylor, N.¹, Ng, P.C.¹, Henikoff, S.²

Multiple alignments of conserved regions of protein families
database summary

CDD Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y., Bryant, S.H.

Alignment models for conserved protein domains
database summary

CluSTr Kriventseva, E.V., Servant, F., Fleischmann, W., Zdobnov, E.V., Apweiler, R.

Automatic classification of SWISS-PROT+TrEMBL proteins
database summary

eMOTIF

Protein sequence motif determination and searches
database summary

iProClass Wu, C.H.¹, Huang, H.¹, Chen, Y.², Barker, W.C.²

Annotated protein database with family, function, and structure information
database summary

NESbase 1.0 la Cour, T.², Gupta, R.¹, Rapacki, K.¹, Skriver, K.², Poulsen, F. M.², Brunak, S.¹

Nuclear export signals
database summary

NLSdb Nair, Rajesh², Carter, Phil¹, Rost, Burkhard³

Nuclear localization signals
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O-GLYCBASE Julenius, K., Rapacki, K., Brunak, S., Gupta, R.

O- and C-linked glycosylation sites in proteins
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Pfam

Multiple sequence alignments and hidden Markov models of common protein domains
database summary

PIR-ALN

Protein sequence alignments
database summary

PRINTS Attwood, T.K¹, Blythe, M.J.³, Flower, D.R.³, Gaulton, A.¹, Mabey, J.E.¹, Maudling, N.¹, McGregor, L.⁴, Mitchell, A.², Moulton, G.¹, Paine, K.³, Scordis, P.¹

Hierarchical gene family fingerprints
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ProClass

Protein families defined by PIR superfamilies and PROSITE patterns
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ProDom Kahn D., Courcelle E., Gouzy J.

Protein domain families
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PROSITE Falquet, L.¹, Pagni, M.¹, Bucher, P.², Bairoch, A.³, Hulo, N.³, Sigrist, C.J.A.³, Hofmann, K.⁴

Biologically-significant protein patterns and profiles
database summary

ProtoMap

Automated hierarchical classification of SWISS-PROT proteins
database summary

SBASE Vlahovicek, K¹, Kajan, L¹, Murvai, J², Pongor, S¹

Protein domain sequences and tools
database summary

SMART Letunic, I.¹, Goodstadt, L.², Dickens, NJ.², Doerks, T.¹, Schultz, J.³, Ciccarelli, F.¹, Copley, RR.¹, Ponting, CP.², Bork, P.¹

Simple Modular Architecture Research Tool
database summary

SUPFAM Pandit, S.B.¹, Balaji, S.¹, Gowri, V.S.¹, Abhinandan, K.R.¹, Vaishnavi, R.², Srinivasan, N.¹

Grouping of sequence families into superfamilies
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SYSTERS, GeneNest, SpliceNest Krause, A., Haas, S.A., Coward, E., Vingron, M.

Integrated database of protein families, EST clusters and their genomic positions
database summary

Database Category: Protein Sequence Motifs