Go to the abstract in the NAR 2003 Database Issue.
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Johns Hopkins University Dept. Biophysics Jenkins Hall 3400 N. Charles St. Baltimore, MD 21218
Contact grose@jhu.edu
RNABase is a unified database of all three-dimensional structures containing RNA deposited in either the PDB or NDB. For each structure, RNABase contains a brief summary as well as annotation of conformational parameters, identification of possible model errors, Ramachandran-style conformational maps and classification of ribonucleotides into conformers. These same analyses can also be performed on structures submitted by users. To facilitate access, structures are automatically placed into a variety of functional and structural categories, including: ribozymes, pseudoknots, etc. Lists of structures in RNABase can be sorted by experimental technique, structural and functional categories (e.g. ribozymes, aptamers, tetraloops, etc.), or by conformational outlier rate. Classification by technique and into structural and functional categories is performed based on keywords in author supplied data such as: title, keywords, etc. RNABase also provides both simple and advanced search tools in addition to these general lists.
V.L. Murthy and G.D. Rose (2003) RNABase: an annotated databse of RNA structures. Nucleic Acids Research, in press.
Category Structure
Go to the abstract in the NAR 2003 Database Issue.