NAR Database Issue

ASTRAL Chandonia, J. M.¹, Walker, N.², Lo Conte, L.³, Koehl, P.⁴, Levitt, M.⁴, Brenner, S. E.⁵

Sequences of domains of known structure, selected subsets, and sequence-structure correspondences
database summary

BioImage

Searchable database of multidimensional biological images
database summary

BioMagResBank

NMR spectroscopic data from proteins, peptides, and nucleic acids
database summary

CADB: Conformational Angles DataBase of Proteins Sheik, S.S., Ananthalakshmi, P., Ramya Bhargavi, G., Sekar, K.

Conformation angles of protein structures, with associated crystallographic data
database summary

CATH Pearl, F.M.¹, Bennett, C.F.¹, Bray, J.E.¹, Harrison, A.P.¹, Martin, N.², Shepherd, A.¹, Sillitoe, I.¹, Thornton, J.³, Orengo, C.A.¹

Protein domain structures
database summary

CE: A Resource to Compute and Review 3-D Protein Structure Alignments
database summary

CKAAPs DB

Structurally-similar proteins with dissimilar sequences
database summary

CSD

Crystal structure information for organic and metal organic compounds.
database summary

Database of Macromolecular Movements

Descriptions of protein and macromolecular motions, including movies
database summary

Decoys 'R' Us

Computer-generated protein conformations based on sequence data
database summary

DSDBASE Vinayagam, A., Sowdhamini, R.

Native and modeled disulfide bonds in proteins
database summary

DSMM - a Database of Simulated Molecular Motions Finocchiaro, G.², Wang, T.¹, Hoffmann, R.¹, Gonzalez, A.¹, Wade, R.C.¹

Database of Simulated Molecular Motions
database summary

GTOP Fukuchi, S., Homma, K., Sakamoto, S., Nishikawa, K.

Protein fold predictions from genome sequences
database summary

HIC-Up

Structures of small molecules (³hetero-compounds²)
database summary

HSSP

Structural families and alignments; structurarlly-conserved regions and domain architecture
database summary

IMB Jena Image Library of Biological Macromolecules Reichert, J., Suehnel, J.

Visualization and analysis of three-dimensional biopolymer structures
database summary

ISSD

Integrated sequence and structural information
database summary

LPFC

Library of protein family core structures
database summary

MMDB

All experimentally-determined three-dimensional structures, linked to NCBI Entrez
database summary

ModBase Pieper, U., Eswar, N., Stuart, A.C., Ilyin, V.A., Sali, A.

Annotated comparative protein structure models
database summary

NDB

Nucleic acid-containing structures
database summary

NTDB Chiu, W. L. A. K., Sze, C. N., Ma, N. T., Chiu, L. F., Leung, C. W., Au-Yeung, S. C. F.

Thermodynamic data for nucleic acids
database summary

PALI Gowri, V.S., Pandit, S.B., Karthik, P.S., Srinivasan, N., Balaji, S.

Phylogeny and alignment of homologous protein structures
database summary

PASS2 Chakrabarti, Saikat¹, Venkataramanan, K², Sowdhamini, Ramanathan¹

Structural motifs of protein superfamilies
database summary

PDB

Structure data determined by X-ray crystallography and NMR
database summary

PDB-REPRDB Noguchi, T., Akiyama, Y.

Representative protein chains, based on PDB entries
database summary

PDBsum Laskowski, R.A.

Summary of key information on structures in PDB
database summary

PRESAGE Smith, A.¹, Barken, D.¹, Levitt, M.², Brenner, S. E.¹

Protein structures with experimental and predictive annotations
database summary

ProTherm

Thermodynamic data for wild-type and mutant proteins
database summary

RESID

Protein structure modifications
database summary

RNABase Murthy, V.L., Rose, G.D.

RNA-containing structures from PDB and NDB
database summary

SCOP Lo Conte, L.¹, Brenner, S.E.², Hubbard, T.J.P.³, Chothia, C.¹, Murzin, A.G.⁴

Familial and structural protein relationships
database summary

SCOR Klosterman, P. S.¹, Holbrook, S. R.², Brenner, S. E.¹

RNA structural relationships
database summary

SLoop

Classification of protein loops
database summary

SUPERFAMILY Gough, J., Chothia, C.

Assignments of proteins to structural superfamilies
database summary

Database Category: Structure