Database Category: Protein Databases
AARSDB Szymanski, M., Barciszewski, J.
AraC/XylS database Tobes, R., Martínez-Bueno, M., Ramos, J.L.
A database of the AraC/XylS protein family of positive regulators in bacteria.
database summary
ASPD Valuev, V.P., Afonnikov D.A., Ponomarenko M.P., Kolchanov N.A.
CSDBase Weber, M.H.W., Doll, N., Marahiel, M.A.
ESTHER Cousin, X.
1, Hotelier, T.
2, Marton, P.
1, Chatonnet, A.
1
EXProt Ursing, B.M., van Enckevort, F.H.J., Leunissen, J.A.M., Siezen, R.J.
FUNPEP
Low-complexity or compositionally-biased protein sequences
database summary
GenProtEC Riley, M., Serres, M.H., Liang, P., Sun, Y.
Histone Database Sullivan, S.
1, Sink, D.W.
2, Trout, K.L.
2, Makalowska, I.
2, Taylor, P.M.
1, Baxevanis, A.D.
2, Landsman, D.
1
HIV Molecular Immunology Database
HIV RT and Protease Sequence Database Rhee, S.-Y., Gonzales, M.J., Kantor, R., Betts, B.J., Ravela, J., Shafer, R.W.
Homeobox Page
Information relevant to homeobox proteins, classification, and evolution
database summary
Homeodomain Resource
Homeodomain sequences, structures, and related genetic and genomic information
database summary
Human Olfactory Receptor Data Exploratorium (HORDE) Olender, T., Glusman, G., Feldmesser, E., Khen, M., Atarot, T., Safra, M., Lancet, D.
IMGT Lefranc, M.-P.
Immunoglobulin, T cell receptor, and MHC sequences from human and other vertebrates
database summary
IMGT/HLA Robinson, J.
1, Waller, MJ.
1, Parham, P.
2, Stoehr, P.
3, Marsh, SGE.
1
IMGT/MHC Database Robinson, J
1, Waller, MJ
1, de Groot, N
2, Bontrop, R
2, Kennedy, L
3, Marsh, SGE
1
InBase Perler, F.B.
All known inteins (protein splicing elements): properties, sequences, bibliography
database summary
InterPro Mulder, N.J.
1, Apweiler, R.
1, Attwood, T.K.
2, Bairoch, A.
3, Bateman, A.
4, Binns, D.
1, Biswas, M.
10, Bradley, P.
1, Bork, P.
8, Bucher, P.
5, Copley, R.R.
11, Courcelle, E.
6, Das, U.
1, Durbin, R.
4, Falquet, L.
5, Fleischmann, W.
1, Griffiths-Jones, S.
4, Haft, D.
9, Harte, N.
1, Hermjakob, H.
1, Hulo, N.
3, Kahn, D.
6, Kanapin, A.
1, Krestyaninova, M.
1, Lopez, R.
1, Letunic, I.
8, Lonsdale, D.
1, Silventoinen, V.
1, Orchard, S.E.
1, Pagni, M.
5, Peyruc, D.
6, Ponting, C.P.
7, Selengut, J.D.
9, Servant, F.
1, Sigrist, C.J.A.
3, Vaughan, R.
1, Zdobnov, E.M.
8
Lipase Engineering Database Fischer, M., Pleiss, J.
Integrated information on sequence, structure, and function of lipases and esterases
database summary
MEROPS Rawlings, N.D., Tolle, D.P., Barrett, A.J.
Metalloprotein Database and Browser Castagnetto, J.M., Hennessy, S.W., Roberts, V.A., Getzoff, E.D., Tainer, J.A., Pique, M.E.
Nuclear Protein Database (NPD) Dellaire, G.
1, Farrall, R.
2, Bickmore, W.A.
2
Nuclear Receptor Resource Danielsen, M., Martinez, E.
NUREBASE Duarte, J.
1, Ourjdal, T.
1, Perriere, G.
2, Laudet, V.
1, Robinson-Rechavi, M.
1
Olfactory Receptor Database
PIR-NREF Huang, H.
1, Suzek, B.E.
2, Wu, C.H.
1
Non-redundant reference database with comprehensive protein sequences
database summary
PKR
Protein kinase sequences, enzymology, genetics, and molecular and structural properties.
database summary
PLANT-PIs De Leo F.
1, Volpicella M.
1, Licciulli F.
2, Liuni S.
3, Gallerani R.
1, Ceci L.R.
3
PlantsP/PlantsT Tchieu, J.
2, Fana, F.
1, Fink, J.L.
1, Harper, J.
3, Nair, M.
2, Niedner, R.H.
1, Smith, D.W.
2, Steube, K.
1, Tam, T.
1, Veretnik, S.
1, Wang, D.
1, Gribskov, M.
1
Functional geomics databases focusing on protein involved in plant phosphorylation and membrane transport, respectively
database summary
PPMdb
Arabidopsis plasma membrane protein sequence and expression data
database summary
Protein Information Resource (PIR) Wu, C.H.
1, Huang, H.
1, Yeh, L.S.
2, Hu, Z.Z.
2, Barker, W.C.
2
Comprehensive, annotated, non-redundant protein sequence databases
database summary
S/MARt DB Liebich, I.
1, Christensen, M.
1, Wingender, E.
2
SDAP Ivanciuc, O., Schein, C.H., Braun, W.
Sequences, structures, and IgE epitopes of allergenic proteins
database summary
SEVENS Suwa, M.
1, Sato, T.
2, Okouchi, I..
2, Arita, M.
1, Matsumoto, S.
3, Tsutsumi, S.
3, Aburatani, H.
3, Asai, K.
1, Akiya, Y.
1
trEST, trGEN, Hits Pagni, M.
1, Falquet, L.
1, Iseli, C.
2, Jongeneel, V.
2, Junier, T.
3, Bucher, P.
3
trEST and trGEN are two databases of hypothetical protein sequences. Hits is a pre-compiled list of domains/signatures predicted on them.
database summary
