Database Category: Genomic Databases
ACeDB
C. elegans, S. pombe, and human sequences and genomic information
database summary
AMmtDB Lanave C.
1, Licciulli F.
2, Incampo L.
2, Marolla A.
2, Attimonelli M.
2
Comprehensive Microbial Resource
CroW 21 Peter, Y., Chalifa-Caspi, V., Olender, T., Glusman, G., Peter, I., Safran, M., Lancet, D., Groner, Y.
Full-Malaria Watanabe, J.
1, Sasaki, M.
2, Suzuki, Y.
2, Sugano, S.
2
Full-length cDNA library from erythrocytic-stage Plasmodium falciparum
database summary
GeneCards Safran, M., Chalifa-Caspi, V., Shmueli, O., Lapidot, M., Rosen, N., Shmoish, M., Adato, A., Peter, I., Lancet, D.
Integrated database of human genes, maps, proteins, and diseases
database summary
Genew: The Human Gene Nomenclature Database Wain,H.M., Lush,M., Ducluzeau,F., Povey,S.
GénoPlante-Info Samson, D., Legeai, F., Karsenty, E., Reboux, S., Veyrieras, J.-B., Just, J., Barillot, E.
GOLD
Information regarding complete and ongoing genome projects
database summary
HGT-DB, Horizontal Gene Transfer-DataBase Garcia-Vallve, S., Guzman, E, Montero, MA., Romeu, A.
Putative horizontally-transferred genes in prokaryotic genomes
database summary
HOWDY Koike, T., Tsurumine, M., Inoue, A., Uchida, N., Kuroda, M.
ICB
Identification and classification of bacteria using protein-coding
database summary
INE Sakata,K.
2, Mukai,Y.
1, Antonio,B.
1, Namiki,N.
1, Sakai,Y.
2, Makino,K.
2, Matsumoto,T.
1, Sasaki,T.
1
Integrated database for rice genome analysis and sequencing
database summary
International Rice Information System McLaren, CG, Bruskiewich, RM
Rice germplasm geneology and field data; rice structural and functional genomics and proteomics
database summary
Medicago Genome Initiative (MGI) Waugh, M.
1, Anderson, W.
1, Bell, C.
2, Inman, J.
1, Schilkey, F.
1, Sullivan, J.
1, May, G.
3
Model legume Medicago ESTs, gene expression and proteomic data
database summary
Mendel Database
Database of plant EST and STS sequences annotated with gene family information
database summary
MitBASE
Mitochondrial genomes, intra-species variants, and mutants
database summary
MitoNuc/MitoAln Attimonelli, M.
1, Catalano, D.
1, Gissi, C.
2, Grillo, G.
3, Licciulli, F.
1, Liuni, S.
3, Pesole, G.
2, Saccone, C.
1
Mouse Genome Database (MGD) Blake, J.A., Eppig, J.T., Richardson, J.E., Bult, C.J., Kadin, J.A., Mouse Genome Database Group
Munich Information Center for Protein Sequences (MIPS) Mewes, H. W., Warfsmann, J., Kolesov, G., Gueldener, U., Mannhaupt, G., Frishman, D.
Oryzabase Yamazaki, Y.
1, Yoshimura, A.
3, Nagato, Y.
2, Yamakawa, T.
1, Kurata, N.
4
PEDANT genome database Frishman, D.
1, Mokrejs, M.
1, Kosykh, D.
1, Kastenmüller, G.
1, Kolesov, G.
1, Zubrzycki, I.
1, Gruber, C.
2, Geier, B.
2, Kaps, A.
2, Albermann, K.
2, Volz, A.
2, Wagner, C.
2, Fellenberg, M.
2, Heumann, K.
2, Mewes, H.-W.
3
PlantGDB Shannon D. Schlueter, Qunfeng Dong, Volker Brendel
PlasmoDB Bahl, A.
1, Brunk, B.
2, Coppel, R. L.
3, Crabtree, J.
2, Diskin, S. J.
2, Fraunholz, M. J.
1, Grant, G. R.
2, Gupta, D.
1, Huestis, R. L.
3, Kissinger, J. C.
1, Labo, P.
1, Li, L.
1, McWeeney, S. K.
2, Milgram, A. J.
1, Roos, D. S.
1, Schug, J.
2, Stoeckert, C. J. Jr.
2
Proteome BioKnowledge Library Costanzo, M.C., Arnaud, M.B., Csank, C.J., Hirschman, J.E., Kranz, J.E., Olsen, P., Robertson, L.S., Skrzypek, M.S., Kondu, P., Lengieza, C., Tillberg, M., Garrels, J.I.
Rat Genome Database Twigger, S.N.
1, Shimoyama, M.
1, Lu, J.
1, Pasko, D.
1, Bromberg, S.
1, Chen, C.F.
1, Chen, J.
1, Gopinathrao, G.
1, Nigam, R.
1, Ramachandran, H.
1, Mathis, J.
1, Nie, J.
1, Maltais, L.
2, Eppig, J.T.
2, Maglott, D.
3, Schuler, G.
3, Jacob, H.J
4, Tonellato, P.J.
1
RiceGAAS Sakata, K.
1, Numa, H.
1, Nagamura, Y.
1, Antonio, B.A.
2, Idonuma, A.
2, Shimizu, Y.
3, Horiuchi, I.
3, Matsumoto, T.
1, Sasaki, T.
1, Higo, K.
1
RTPrimerDB Pattyn, F., Speleman, F., De Paepe, A., Vandesompele, J.
Saccharomyces Genome Database Dolinski, K., Balakrishnan, R., Christie, K., Costanzo, M., Dwight, S., Engel, S., Fisk, D., Hong, E., Issel-Tarver, L., Sethuraman, A., Theesfeld, C., Binkely, G., Lane, C., Schroeder, M., Dong, S., Kaloper, M., Weng, S., Andrada, R., Botstein, D., Cherry, J.M.
SOURCE Diehn, M.
1, Sherlock, G.
2, Binkley, G.
2, Jin, H.
2, Matese, J.C.
2, Hernandez-Boussard, T.
2, Rees, C.A.
2, Cherry, J.M.
2, Botstein, D.
2, Brown, P.O.
3, Alizadeh, A.A.
1
Functional genomic resource for annotations, ontologies, and expression data
database summary
SubtiList Moszer, I.
1, Jones, L.M.
2, Moreira, S.
1, Fabry, C.
1, Danchin, A.
3
The Arabidopsis Information Resource (TAIR)
The Phytophthora Genome Consortium Database Waugh, M.E.
1, Tyler, B.M.
2, Mitchell, T.
3, Houfek, T.D.
3, Dean, R.A.
3, Anderson, W.T.
1, Inman, J.T.
1, Schilkey, F.D.
1, Sullivan, J.P.
1, Bell, C.J.
4
ToxoDB:The Toxoplasma gondii Genome Database Kissinger, J.C.
1, Gajria, B.
2, Li, L.
2, Paulsen, I.T.
3, Roos, D.S.
2
WILMA Prlic, A., Domingues, F.S., Lackner, P., Sippl, M.J.
ZFIN Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., Westerfield, M.
